AMCG00011480


Basic Information

Item Value
gene id AMCG00011480
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26362391 ~ 26368116 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011480
TTCGAAGACTACAGAGGCGGAGCCAGGAAGTGAGTACTTGTCGTGTGCGAACCTGACTTGCTGTCTGCGTCTATATAAATGCCATGAACCCGGTGGCGGTGGTGTTTGATGATgtcaatatatttacagttttaacacatggacagaaattgaatcgcaattaaaaataaaccgcTACGGTTTCAGTTTACTAGAATAGGCTTTTAAGTTGTAGAAGTCCTGCTTACTATTCTAACTCGGTTGTTGTTTTCAAGAATCGGAATTGGAGTGTCAGAATGGTCCTTAGCGGCGCGATGCGACGGGGAGGCTCCGGTGGGCTGAGGGTGACGGTACTGCTGCTCTCCATGCTCTGTCTTCATCTCCCTCAGGCCGCCGCTGACAAAGGCTGTCTCTGCCcacccccacagacacactctgCACTGTCAGTGGTGGAGACCACTGATCCCAGTGACCGGGATGGGGAAGCCCAGGTAGATGAAGAACTCAACCCAGAAGATCTGGAGGTGTTTCAGCCCACAGACGTGTGGCAGTCCCTCAGGCCAGGCCAGGCCGTCCCCGTCGGCTCTCATGTGCGTCTGAATCTGCAGACGGGCGAGAGAGAGGTCAAGCTGGGGGAGGAGGCGCGGCTGAGATACTGGCACAGCGGCCAGAGGAAGGGCATGTTGAACACAGAGGCCCCACAATTCAGTGCACAGGAGCTGAAGGAGGCCCTGAAGAAGTTCAAGGAGGAGGAACCCACCCACAAGACCAGGGAAAAGgaGGAGGCAGCAGTGCGGGCTCAGTACCGCCccctggaggagctgaagaggGACATGGAGGAGCTCAACATGATGGTGGAGACGGACTTCCAGGTGATGAGTCGCTTGGTGAAGCAGTTCAACCACTCCGAGGCCACGCTGGACGAGAGGGTGGCCGCGCTGCTGGACCTGGAGTACCTGGTGCATCAGGTGGACAATGCGCAGGACCTGGTGGCGATGGGGGGGCTGCGGCTGGTGATTGACAGTCTGAACAGCTCAGAGCCCCTCCTACAGGAGAACTCGGCCTTCGTGTTGGGCTCGGCGTTGTCCAGTAATCCCCGGGTGCAGGTGGAGGCAGTGGAGGGGGGTGCTCTCCAgaagttgctgctgctgctggccaCCGACAGACCATTGCCCCTCAAGAAGAAGGCGCTGTTTGCGGTGGCCTGCCTGTTGCGTCACTTCCCCTTCGCTCAGAGGCACTTCCTGCAGCTGGGGGGGTTGCAGGTGCTGGGGGAGCTGTTCCGCACACCGGGGGGAGGGGCCATGCGCGTGCGGGTCGTCACCCTGCTGTACGACATGATCGTGGAGAAGTACTCCCAGGTGTCCCTGCTGCCCCTGCTGGAGGAGCAGGGCTGGTGCGGCCTGGTCCCCGAGCTGCTGGCTTCCCCCGAGCACGACTGGCGTGAGAAGGCCCTGCGCACCCTGCTGGCCATGATGCCCCACTGCCAGGACCTGTACCGCCAGGACCGCAGCCTGGCACGCTCACTCTCTGCACTGCAGGAGCAGTACCAGGAGCTGGCGGAGGGCGAGCGGGGGCTGGGCGATGAGGATGGCTATTTCGGGGAGATCCTGACCCTGCTGGACACCGTGCTAGGGAGAGTGCGCTGA

Function

GO: NA

KEGG:

id description
K14001 SIL1, SLS1; nucleotide exchange factor SIL1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011480 True 1628 mRNA 0.60 10 26362391 26368116

Neighbor

gene id symbol gene type direction distance location
AMCG00011482 NA coding downstream 336 26348588 ~ 26362055 (-)
AMCG00011475 csnk1a1,LOC106604944,LOC107593197,LOC106611977,LOC107554841 coding downstream 27630 26320021 ~ 26334761 (-)
AMCG00011474 NA coding downstream 166541 26191126 ~ 26195850 (-)
AMCG00011469 NA coding downstream 199513 26138966 ~ 26162878 (-)
AMCG00011470 hdac3,LOC107688598,LOC102780161,LOC107746152 coding downstream 242376 26113869 ~ 26120015 (-)
AMCG00011481 NA coding upstream 1205 26369321 ~ 26369867 (-)
AMCG00011479 NA coding upstream 2057 26370173 ~ 26377379 (-)
AMCG00011484 LOC107598335,LOC107741069,LOC107664724,LOC107567475 coding upstream 78464 26446580 ~ 26490473 (-)
AMCG00011486 LOC106604933 coding upstream 203056 26571172 ~ 26641966 (-)
AMCG00011487 slit3,LOC106604933,LOC106611921 coding upstream 320298 26688414 ~ 26731680 (-)
G107166 NA non-coding downstream 32782 26311843 ~ 26329609 (-)
G107082 hspa9 non-coding downstream 164558 26196112 ~ 26197833 (-)
G107057 NA non-coding downstream 234626 26094805 ~ 26127765 (-)
G107038 NA non-coding downstream 345711 26015984 ~ 26016680 (-)
G107037 NA non-coding downstream 349944 26009520 ~ 26012447 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding upstream 20096 26388212 ~ 26409375 (-)
G107232 NA non-coding upstream 465449 26833565 ~ 26833850 (-)
G107233 NA non-coding upstream 470051 26838167 ~ 26842786 (-)
G107237 NA non-coding upstream 542399 26910515 ~ 26910758 (-)
G107238 NA non-coding upstream 543892 26912008 ~ 26912220 (-)
AMCG00011465 NA other downstream 342991 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1344059 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 2527317 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 2544848 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2872749 23393104 ~ 23489642 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 138827 26506943 ~ 26516507 (-)
G107713 NA other upstream 3256968 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3518100 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 3823457 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 5762378 32130494 ~ 32205554 (-)

Expression


Co-expression Network