AMCG00011493


Basic Information

Item Value
gene id AMCG00011493
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27058992 ~ 27067377 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011493
gaaaacaggagacaattaTTCAGACAGAGAGTTaatacaatctggaacaaactccccgatgtggttgaagccacaatttgggaacattcaaaaatagactgggtaggatctttggatcacttagttattaatggacaccaaacgagctgATGGGTCCAGtggcctctcgtttgtaaactgttttatgtttttctgataTGTGTTCGGTATGACGTCAGTTGTTGTCATTTGCATACGTAACAGTCGCTGGAATTCGATTGTTTGCTCTGTGGATTTTGCCTAATTAGAGCTGATAGTGTGTTTGGAGACGGAGCCGTACAGTCGATTGATTTTACCTAAgtgtaatttcagttttaacgAGAGACTTTTGGttgtattgaattcaaaatatggCTGCGATTGCAGACTTCAAGTTTTGTCTTGAATACTCTGCAACTTTCAAGTAGGCCGTTTCATTAatctatatttttgttttcattgcagcAGGGTATGTATagactatttgtttttaaatgacagtacAGTTAAAGTCGGGACacaatgtgaataataatgtatttttcaccaGTACAAGATCGTGTGAATTGCTCCTAAGTGTGGGTGTGTAGCTACACATTGAACCATTATTCTCGTTTATTGATTACTGTATGAGAGGATATTAAATATGCTGAAATGGTACTGTCTTACTCCCtgagataaattaatgaatataatGACTGTGGTGTATAGGCATATAACGTTTTTGTTatctttttgtaatattttcaatttttgtcTAAGCTATAAATATTTTCTGATATCTGTTGAGTAAGAAATAAACCTGGGTCATTTAAACGCAACAACAGATTTTTAGCCAACATCTAAAGTgtattgctttcattatttCGTAATCCTCGGCACAACCAAGACTTCTGTGCAAATGTTGTTGCATTAAAATTATGTTGTAGGTGGAAATATACCCCTGATGAGAAGGAGAATGAGCGGCAGTTCCTGCTGGACTTACAGTTCATCTGTGACAGGCTGCAGAAACTCCGCATTAGCGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGTGCATCGCCTGGACCCCAGTCTGCTGACAGGGATGAACTCTGTCCCTGACCTTACCCCCTCTCTTGCCAACCTTGGCATACAGCCCATGGGGGGACATGGCCCAGGCTCTTTGCCACCCCAGCCCTCAGCAGAGGGTGCCCGGTGCTACCGGCTGGGCGAGAGGAAGGAGCCGCGAATCATCAACGTGTCATTCACGGATGATATTCAGCTCAACAAGGCCGAGAAGGCATGGAAGCCTACAATTAAGCAGGCTCCCATAGTGGGTGATGACCCCGAGGTCATAAAGACCCAGGAGCTGTTCTGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAAGTGGACGAGCTGACCATTGACACGGAGCAGCGACTCCAGGGTGTCATGGCGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATACGCCAATATGTGCCAGTGTCTTCTGAGGCTCAAAGTCCCGAGCGCTGACAAGCCGGGAGAGACGGTGAATTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGGGCGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGCGGCGCTCGCTAGGCAATATCAGGTTAATTGGGGAGCTGTTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATTGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACCGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCTGATCATCAAAGAGAGGAAGACCTCCCCTCGAATCCGCTTCATGCTGCAGGATGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGTGTCCTAAGACAATCAACCAGGTCCACGAGGAAGCAGAGCTGGAGGCGCACAGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGACGTGGGGGCCCTGGGGGGCCGCGCTCGGCAGcttccgAGACTGGATGGCGCGCTACCGGCACCCTGAAGCGCTGCTCCGCCCTGCAGCAGTCGTCCTCTGCTGCTCCTTCCTCCGTTTTCAGGAGTAGCTCTCGCCGGGATGGCGGTGAGTGTAGTAACCTCTTCAAGCGGCCGGAGCGTCATGAGCGCGGCCAGCACGAACACTCTGAGAGGAGAGAAGCTGGGGATAAGAAAGGCCTGGACAGGATTGACTTGAAGAAACCAAAGTCCATCATTGGGGAGTGTCTCCACCTCAATGACATGAAGCCCTCAGCAGTGGCTCCCCAGCGCTCCCAGCAGGGCGAGAGGAGGGAGCAGCGCAAGGTCATCACCCTGTCATTCTCGCATGAGGTTCAGCTCAACAAGGCCGAGAAGGCATGGAAGCCTACAGTTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAATTGAACGAGCTGACCATCGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTTGAGAAGGCCATCTCCGAACCCAATTTTTGCCCCTCATACGCCAATATGTGCCACTGCCTTCTGAGGTTCAAAGTCCCGACCACTGACAAGCCGGGAGAGATGGTGACTTTCCGCACTCTGCTTTTAAACCGCTGCCAGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGTCTtcaagaagaaacagaagatgCTGGATGCATCCTTGGGCGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCACAAGGCCCAGCGGCGCTCACTAGGCCACATAAAGTTCTTTGGGGAGCTGTTCAAGGTGAAGATGCTGACAGAGGCCATGATGCACGCCTGCATCTTCAAGCTGTTGAAGAACCATGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACCTCGAGACAGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCTGATCATCAAAGAGAGGAAGACCTCCTCTCGAATCCGCTTCTTGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGATCCAAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAAGTGCACCATGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCAAACTTCAGCGAAAGTGTCCTGTCACGCGTCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTGTGAAAGCACTAGAAATAGAAACACCAGTCCTTCTCTGGCGAAGATGAAAGCATCAACATACGATCATTcaatttctttcccttttctgtttaatctacaaaataaaatgata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011493 True 3608 mRNA 0.50 15 27058992 27067377

Neighbor

gene id symbol gene type direction distance location
AMCG00011490 NA coding upstream 89709 26958142 ~ 26969283 (+)
AMCG00011491 LOC101077011,LOC100136477 coding upstream 135051 26910351 ~ 26923941 (+)
AMCG00011477 klhl3,LOC106604937,LOC106611969 coding upstream 623534 26413301 ~ 26435458 (+)
AMCG00011478 NA coding upstream 649619 26401965 ~ 26409373 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding upstream 661010 26388294 ~ 26397982 (+)
AMCG00011494 htr4,LOC108269380 coding downstream 121174 27188551 ~ 27195648 (+)
AMCG00011495 lman2 coding downstream 204221 27271598 ~ 27279308 (+)
AMCG00011496 tmed9,LOC108416549 coding downstream 212793 27280170 ~ 27283428 (+)
AMCG00011498 b4galt7,LOC106612238 coding downstream 221066 27288443 ~ 27295823 (+)
AMCG00011497 NA coding downstream 229954 27297331 ~ 27298573 (+)
G107128 NA non-coding upstream 607417 26447202 ~ 26451575 (+)
G107126 NA non-coding upstream 671008 26387748 ~ 26387984 (+)
G107098 NA non-coding upstream 766545 26277374 ~ 26292447 (+)
G107084 NA non-coding upstream 856373 26199950 ~ 26202619 (+)
G107004 ergic1 non-coding upstream 1170154 25882692 ~ 25888838 (+)
G107321 NA non-coding downstream 400027 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 429950 27497327 ~ 27501442 (+)
G107382 NA non-coding downstream 546584 27613961 ~ 27615738 (+)
G107402 NA non-coding downstream 723489 27790866 ~ 27874138 (+)
G107408 NA non-coding downstream 815718 27883095 ~ 27883396 (+)
AMCG00011488 NA other upstream 216200 26818052 ~ 26842792 (+)
G107202 NA other upstream 287778 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 698217 26356167 ~ 26360775 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 1396813 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 3214081 23835819 ~ 23844911 (+)
G107394 NA other downstream 644829 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 1801765 28869142 ~ 28876355 (+)
G107741 NA other downstream 2630224 29697601 ~ 29699419 (+)
G107784 NA other downstream 2790593 29857970 ~ 29875476 (+)
G107858 NA other downstream 3104411 30171788 ~ 30212090 (+)

Expression


Co-expression Network