AMCG00011498 (b4galt7,LOC106612238)


Basic Information

Item Value
gene id AMCG00011498
gene name b4galt7,LOC106612238
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27288443 ~ 27295823 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011498
TTTGTCTGTGTCTCAAGTGTTCCGGGGGGGGGCGGTTTTCCGACGGACTCCACTTGAAAATAGCTAGCGTGTAGAATTATCCCAGATAATGTGGGATTTGTAcgactataaataataatatacgaACAACAGTcgctttgttttaaaagcaaaaaagttCAGTCGTATGTATGTTCAGAAAGGCCTCATTTGGCGATGGTCGGTGGATTAGTATGTTCTGTCAACGGTGGATATGAAGTCGAGCGTCTTAAATAATATCCACTTTTAATTAGCTATTAAAAAGAGATTCAACAATCCTGACGATATTAAGAGGTAGATtatacatcttttaaaaatgaaaacgcCGAAGTAAAAAAGGTGGCATTCAGAATGGATGCGTATCTATAGTGTCGGTAAAACCATGACGTGGccagaaagaggaagagaagagacAATATGATGCGGGTAAAAGGAAAAAGgcaataaaaagaaagtaaaacatgGATTGTTGTTACTTTAGAAACCGAGTGAAAGACAGTGTCAGTTTTATAACCGGTACGCTTCGGGAATAGTATTGGTGCTTTATTACAAGACGTGGTCCAGTTTCTAAGACGAATACATTCACATTGAAGATCAGCAAGATGATGCACTCCTCTCGAAGAAAACCTGTGCTGTATTTCAAAGAAGACAGAAGGTTCCTCTCCAGGAAATGCACGGTCTTCAAGCTGTTCTGCGTCTGCACGGTTGTGGTGGTGGGCTCCTTGCTGTGGCTGCAGCTCAGTTGCTCTGGAGACATGAACAGGGCAGTGGTGGACAGCGCCCTGCCCCGCCAGCCCTGCCATCAGGGCAGACTGGTGGCCGCGGCCGACGACCCCTCCTGGGGCCCTCACCGCATGGCCCTCCTCATCCCGTTCCGCGAGCGCTTCGAGGAGCTGCTGGTGTTCGTGCCCTACATGCACGCCTACCTGAACAATAAGAAAATCCGACACAAGATCTTGGTCATTAACCAGGTGGATCACTATAGGTTCAACAGAGCGTCTCTGATCAACGTCGGCTTCACAGAGAGCGGGAATGATACCGATTACATCGCCATGCACGATGTGGACCTCCTGCCTCAAAACATCGCTTTAGATTATGGCTTTCCTGAATCGGGTCCCTTCCACATTGCTTCCCCAGAGCTGCACCCCATCTATCACTACAAGACCTACGTGGGAGGAATTCTGCTGTTGACAAAGCAGCATTACCAGATGTGCAATGGCATGTCCAACCGGTTTTGGGGCTGGGGGAGAGAAGACGATGAGTTTTACAGGAGGCTGAGAACAGCAGGCTTACAGCTTTTCCGACCGACTGGCATTACGACGGGGTATGAAACGTTCCGTCACATCCACGACCCGGCCTGGAGAAAGCGGGACCAGAAGAGAGTGGCCGCCCAGAAGCAGGAGCAGTTCAAAGTGGACACAAATGGGGGGCTGACGAATCTGCGATACAGAGTGGAATCCAGAAAGGAGATGACCATCGGGGGTGCCCCCTGCACCGTCATCAACATTCTCCTGGAGTGTGACCAGACCGAGACCCCGTGGTGTCTGCTCAACTGACAGAGGGATTGGGGAGCATGAACGGGAGCGCTCAGTGCTAAACCGAAGAGCAACTTAATTTAGGAGAGCTGCGGATTGCCCTCGGGTCCCTGCTCTTCGAAGGAAATCTCTTTTGTAGCGTATTGTATACCAGACACTTTGACAAAGTGATGTGGTCAGACAGAGAAGCTGGCACACGCAGTATTATAATTTATACtgaactttttttgttttgttcgctttacattttaagttatggttatattacaatatatattacaacTGCCTGAACTATATATCTACAGACTTGAATAAGGGACTGTCAATTTCTATAGGTGGTTTGAAATCTTCAAACATGCAGAATTTTGTATTTGGGACATGGTAAAATAGCACTTATATCGTACAAGggtttagatttatttttaatgtgtccTTTTTGTAAGGGTTTCTGGTTTCAGTGGCTTTACCTGGAGTGATAAGCCCTCTTTCCCAGCGAATAATGGTGGATATTTTGGGAGTGCTTTTCCTAGTACTTTTGTAGAGCATATTATTGAATTTAACACAATTTTCCCCCAATGAAATGGCCTTCGAATGCCCCATTTTCATTTTAGAGTTAAAGGtggacttttcttttttcctggtCTCTCAAAAAAAACGCACACATTCTGATTCATAGCTTGTCAGGTTTGCACAGAGCACCTCTGCTGGGATAGAGTGGCAGGAGTGATGGGTGAAATACACCAGGCATTATCAATTCTGCTTTCATCAGTCCGGTAGATagaaatcagaaagaaaatggtACGGTGACTATTTGCACAGTATTTATATGAAGCCGCATTTCTGAGACATCGGACGTGCGTGCTCTTTCtggtttgaaaaaaatagttttgtattAAATGCTGTCTTTAATTATGAACACTCTATGAacccttctttttttaaatctctaaaAGTTCTTTGTCTTGGGATTTAGGAAGTGTGTGAAATACAACAATGTTATCAAGgaggaattaaaatgtataagcGTGTGCATACAGTGTTTGAACGCTGCCCAGACACAAGTTTGAGGTCTGATATATGGGGGAGCTAATTGTTTTGGTGCAGAACTTGCTGTATCACCTGAAAAGAGAATTGTGCCAATTTAATTTCTCTAACTCCAAAGCAGATTAAATGCTGTTCCCCCCCATTCACCGTAATGCAAATTTCACAAGAATGTACTGCTGGGACCAACCGGTGCCTCAGATAAAGGAGAAGTAAAGggcatttattttagctttcaGAATTGCAGGACAAAATCTGTGATGTATACAAAGCAAAAACACTTCTTCCTTTAGTGCAAATGATCCATCATATACTACTTCTGAGACAGAAAGCCAAATGTGAACTAATGCtagtttattttctaatatatatttagaaatcatGTTCAAAGTTACCCACATTGGGTTAAGTTCTATGTAAAAATGTCAGATGGTAAATCTCCCTATCTATTAATGAAGTCTGCAATGAGACTAGTTTTAAGCGCTGTGCACTGCATGCAAAGTTCAGTTTCATTTGTAAAGTTTTTGTAGCACACTTGAAACTCGCTAGATGGCACTAGTATACTACTTTACTAAATGTGTAGTTCCCATTATGTTATTCTCAGAAGTTGGGgttacacagaaataaaaccaaTCACGAAAAATTGTGCGTACAATATGTAGAGTCTGAGACGTAAAATGTAAAGTCATTATTTTACCTTTCTATAAATGTGATGGACTTTTGTTTATTAACGTAGGAATAGCACCCTTTGGCCTCTGCACTCtgaattattgtacattttgtgggAAACTAACTTAAAATAGCCGCCAATGTAaggtaagaaaacaaaatatagaaaagttGTAGAAAGGCAAACGGATTTATAGCCTAAAATTCAGGTCCATATTGAGCAGCCTATTGTCCCAGGTCTGTTTAATTCTAATGGTCTTGTGAACAGCAGCAAATTAGCCTTTTAACGAGCCTTTGATCTCGATAGGCTATTGTCCACATTTTGACGGACAGCATTAATAAGAATATGGCCGTTTACATTGCGACACccattcaactttttttttttataaggtgtgaaaaaaacaagttcTACCTCCTTGCTGTAAacgagttatttatttatgcggGCAAAGTCAgaaattatgtaaaacatttgaaGTGGCAGTTTTTCTATTAAAGGTCATGGAAATCAA

Function

symbol description
b4galt7 Predicted to enable xylosylprotein 4-beta-galactosyltransferase activity. Predicted to be involved in glycosylation and proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 1. Orthologous to human B4GALT7 (beta-1,4-galactosyltransferase 7).

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 7

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0046525 xylosylprotein 4-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00733 B4GALT7; xylosylprotein 4-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011498 True 3778 mRNA 0.42 6 27288443 27295823

Neighbor

gene id symbol gene type direction distance location
AMCG00011496 tmed9,LOC108416549 coding upstream 5015 27280170 ~ 27283428 (+)
AMCG00011495 lman2 coding upstream 9135 27271598 ~ 27279308 (+)
AMCG00011494 htr4,LOC108269380 coding upstream 92795 27188551 ~ 27195648 (+)
AMCG00011493 NA coding upstream 221066 27058992 ~ 27067377 (+)
AMCG00011490 NA coding upstream 319160 26958142 ~ 26969283 (+)
AMCG00011497 NA coding downstream 1508 27297331 ~ 27298573 (+)
AMCG00011499 emx3,LOC107664735,LOC107563604,LOC108416560,LOC107598366 coding downstream 25849 27321672 ~ 27323945 (+)
AMCG00011500 rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding downstream 176808 27472631 ~ 27481990 (+)
AMCG00011502 NA coding downstream 188365 27484188 ~ 27496643 (+)
AMCG00011505 NA coding downstream 260477 27556300 ~ 27583803 (+)
G107128 NA non-coding upstream 836868 26447202 ~ 26451575 (+)
G107126 NA non-coding upstream 900459 26387748 ~ 26387984 (+)
G107098 NA non-coding upstream 995996 26277374 ~ 26292447 (+)
G107084 NA non-coding upstream 1085824 26199950 ~ 26202619 (+)
G107004 ergic1 non-coding upstream 1399605 25882692 ~ 25888838 (+)
G107321 NA non-coding downstream 171581 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 201504 27497327 ~ 27501442 (+)
G107382 NA non-coding downstream 318138 27613961 ~ 27615738 (+)
G107402 NA non-coding downstream 495043 27790866 ~ 27874138 (+)
G107408 NA non-coding downstream 587272 27883095 ~ 27883396 (+)
AMCG00011488 NA other upstream 445651 26818052 ~ 26842792 (+)
G107202 NA other upstream 517229 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 927668 26356167 ~ 26360775 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 1626264 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 3443532 23835819 ~ 23844911 (+)
G107394 NA other downstream 416383 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 1573319 28869142 ~ 28876355 (+)
G107741 NA other downstream 2401778 29697601 ~ 29699419 (+)
G107784 NA other downstream 2562147 29857970 ~ 29875476 (+)
G107858 NA other downstream 2875965 30171788 ~ 30212090 (+)

Expression


Co-expression Network