AMCG00011511 (LOC100196276)


Basic Information

Item Value
gene id AMCG00011511
gene name LOC100196276
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27908392 ~ 27915999 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011511
TACAGAGCAGGTCAGTGCGCCTGCGCCGTGTTCCCTCCTGCGCTTCTCGACTTCCGATAGAGAGGTCAGGATAAAGCGGCAGCTTCAACACAAACTGGAGAAAACAAATACCTGAAACGTTTCTAACCAgATTGTACACGGCAGGCGGTATTGTGGAAAGTGCTGCACAATTTCCCGAGTTGTTTTCAGTCGTTTCCCCAGCCGTGCACCATGCCAGCCGCGCTTGCAGATACCAGTCAGATTATCTGTGAAGTCTGGGCCAGCAATGtggaggaggagatgaggaAAATCCGGCAGATAATTCAGAGTTACAACTATATCGCCATGGACACAGAGTTTCCAGGTGTCGTGGTGAGGCCCATAGGAGAGTTTCGTAGCACTGTGGATTACCAGTACCAGCTATTGCGGTGTAATGTGGACCTGCTGAAAATCATCCAGCTGGGACTCACGTTTATGAACGAGGACGGAGATTATCCGCCGGGAACAACCACCTGGCAATTCAATTTCAAGTTCAATTTAACTGGCTATGATTTTGGCTACTTGGTGAAGCTTCTTACAGACTCTCGGCTGCCAGAGGAGGAGCACGAGTTTTTCCAGATTCTTAACCTCTTCTTTCCTGCCATTTATGATGTTAAATATCTCATGAAGAGCTGTAAGAACCTCAAGGGGGGGCTTCAGGAAGTGGCTGACCAGCTGGAGTTGAAGAGAATTGGACGGCAGCACCAGGCTGGCTCCGACTCGTTGCTCACAGGAATGGCTTTCTTCCGAATGAAAGAGTTGTTTTTCGAAGACAATATCGACGATGCAAAATACTGCGGCCGATTGTATGGCCTGGGGTCTGGATCTTCCCAAAATCAAAATGGCATTGCCAGTTCCTCCCAGGAagaaagcaacaacaaacacTGACCAAAAGAATTGAAGAGCATCAAACAGCGGATGCACTTGTTTTATCTTATCCAACAGTtttgttgaatatatttttttcagcacaaaaaaaaaaaaaaaaaagagaaaaaaaaaatgaatttctgtATAAAATGCATCAGTGAAAGGACTTTATACTGGCGAACACATTCTGGTCAGTCAGgttattttttatagtttaattTCAGCAGAACCatagtttttccctttaaataCCACTATCGAACCTTTCTAGCTTTAAATTGGACTTGATTTGGAAccttttattgctttttgtttgcagCAGTAGTTACCCGATTTAAtatcaaattcattttttcatgtaactatttttttttaataacatgggGGACCAGAGCCTGTGTGCTGTGTACAGTTAACACAGAAGTACAGCATTTTAATGTGCCCAAAAGCAATCATTTTCCACAATTTgccaacaaaaagaaaaaggtctcTAAGCCCATAGAAGTGGTAAAAGATTTAAGaatgtttcaaattcaaataagaaCACTGTTGGATACTTTATAGACAtgtttgtagaaaatgtaatattttaaattatgctgGAAAggtatgtatattaaaatgtaaaatttcaAAGATGATGTTACGTTTTACcatttttaacagattttaGACTTTAAACTGGCTGGGGAGGGATGGCGATAAATCAGGAAAGAAGCTTCTGAGGTTCACTGTACCTTTTGCTCTTAAGTTGTTCACCGCTAACTTCTTTAAATAGATGTTTgtgatttatattgtttttaagacgtacattgttttaaactgttGTATATTAAAGTGTTTTCTATAAACTGAATCTGCACTTTTAGTATTTTGTCATGTCTTCCAGCTTTTGGGGCATGCACATACCCATAAGGTCACAAAGCAATGCTCAGTAATGCAGTAAAAACATTAGTTAAAATGTCAGTATGTTTAATGAAACctataaaaagtatatacatttgGAGGTGTAAATATTGAATGATTTTTGACAATTTTTTACCTCCTCTGGTCCtttattatct

Function

NR:

description
CCR4-NOT transcription complex subunit 7

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011511 True 1952 mRNA 0.39 6 27908392 27915999

Neighbor

gene id symbol gene type direction distance location
AMCG00011510 NA coding upstream 1541 27895516 ~ 27906851 (+)
AMCG00011504 hand1,LOC106603969 coding upstream 313388 27591655 ~ 27595004 (+)
AMCG00011505 NA coding upstream 324589 27556300 ~ 27583803 (+)
AMCG00011502 NA coding upstream 411749 27484188 ~ 27496643 (+)
AMCG00011500 rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 426402 27472631 ~ 27481990 (+)
AMCG00011512 mrpl22 coding downstream 36300 27952299 ~ 27958923 (+)
AMCG00011516 NA coding downstream 632504 28548503 ~ 28556689 (+)
AMCG00011513 NA coding downstream 655623 28571622 ~ 28574341 (+)
AMCG00011518 NA coding downstream 861034 28777033 ~ 28789389 (+)
AMCG00011523 rab24 coding downstream 1035311 28951310 ~ 28967738 (+)
G107408 NA non-coding upstream 24996 27883095 ~ 27883396 (+)
G107402 NA non-coding upstream 34254 27790866 ~ 27874138 (+)
G107382 NA non-coding upstream 292654 27613961 ~ 27615738 (+)
G107331 NA non-coding upstream 406950 27497327 ~ 27501442 (+)
G107321 NA non-coding upstream 439825 27467404 ~ 27468567 (+)
G107450 NA non-coding downstream 372151 28288150 ~ 28288391 (+)
G107502 NA non-coding downstream 750167 28666166 ~ 28666386 (+)
G107513 NA non-coding downstream 798124 28714123 ~ 28714489 (+)
G107530 NA non-coding downstream 879888 28795887 ~ 28863757 (+)
G107618 NA non-coding downstream 1165232 29081231 ~ 29161742 (+)
G107394 NA other upstream 180525 27712206 ~ 27727867 (+)
AMCG00011488 NA other upstream 1065600 26818052 ~ 26842792 (+)
G107202 NA other upstream 1137178 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 1547617 26356167 ~ 26360775 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 2246213 25607986 ~ 25662179 (+)
AMCG00011519 NA other downstream 953143 28869142 ~ 28876355 (+)
G107741 NA other downstream 1781602 29697601 ~ 29699419 (+)
G107784 NA other downstream 1941971 29857970 ~ 29875476 (+)
G107858 NA other downstream 2255789 30171788 ~ 30212090 (+)
AMCG00011551 NA other downstream 3067980 30983979 ~ 31173789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019759 cnot8 coding NC_007132.7 CM002905.2 36442085 ~ 36453594 (-)
grasscarp (Ctenopharyngodon idella) CI01000040_05909175_05910454 CNOT8, CNOT7 coding CI01000040 null 5908714 ~ 5910454 (-)