AMCG00011514 (LOC105893206)


Basic Information

Item Value
gene id AMCG00011514
gene name LOC105893206
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27891757 ~ 27895311 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011514
CaaagtgttatatatatatagtgttaaataaaattgaagTATCTATATTGACAAAATTATTACGCAGTGGTTATATTTATTCCGTTTTTAAATAACACGAATGTCGTTTGACAGGTATCACAGAAGTCAAGGAAGCTCGAAAGTAAAATATTTCCTGGTTTGCTGGTAACgacctgtttttattgttgtgcaCTTGAATGGGTTTTGGTTTCGTAGTGGTAGTTGTCACGTCTGTTTTGATATGTTGCTGAAACAGCGGGGGAATCCggtgcttttcattttcctcgGGTGCACTGTGGTCTGTTTCACTGGTGCACAAAGAGCAGCTGGATTTAGAACTGAGCCGCCACAGAACAAGTCGCATATTCCCGAACAGCGCCTGGCCAATCTCCCAGCTCTCCGGGAGGTCGTTGTAAAGGAGGGATCCAGTACTTTAATTGAATGCAACGTGACTGGAAGCTATGAGGATATACTGTGGTACAACTCCAAGGGACACATTCTGGATGAagaggaaggagGAGGAAAATGGTTGATCCTAGACAAAGGCGTCTTAAACATCACAACAGTGAGTTTTGAAGACCGAGGCAGGTACACGTGTATAGCCTCGGGCTCCTCAGGGACCTCGAACTATACCATCACCTTACGAGTGGCGTACACCCACAGCGGCCTTGGCTTCTACTATGTCATAGTGTGCCTGGTTGCCTTCACCATCACCATGATCCTCAATATCACCCGGCTCTGCATGGTCAGCAGCCACCTGCGCAAGACAGAGAAAGCCATCAATGAGTTCTTCCGGACCGAGGGGGCCGAGAGGCTGCAGAAGGCCTTCGAGATTGCCAAGCGCATCCCCATCATCACCTCGGCCAAGACGCTGGAGTTGGCCAAAGTCACCCAGTTCAAGACCATGGAGTTCGCCAGGCACATCGAAGAGCTTGCCAGGAGCGTACCCCTGCCGCCCCTCATCCTCAACTGCAGGGCTTTCGTGGAGGAAATGTTTGAGGCCGTCCACCTCGACGACCCTGACCGGCCCAGGAAAGCAAGCAAGCATTGCCAGGCTATTGATGGATGCCCGGAGGTGGGGCAAGAGAGTATTTATACTGTCCAGTCAGGGGTCCAAGAGAGTGCTGCCCGAGAAGGAGATTTGGAATATGGGTTTCCTCAGGAGCAAGGCCAGGAAATACAAGTCTCTGTTCATCTGCAATTGAAACCGCCCGAGGTGGAGGTTGATTGCAATAGTCATGGCCCTGAAGACAGTGATGATGAGATGGCTGTTTCCATGCTAGGCACCACTGGTCCTAAATGTGTCATTTATGAAAGTCACATCTAGGCCTTGAGGGCTGAAGACCAGCACGTTTTTAAGAttcctttaaaacatttacccACCAAGATGTTAAATTCAAGTTGAAGTATACAAATTGTCGGAGGGGTAATGGCTTTTGACATTTACCTGAATAAATGGCTCTTGCTTACCTTTTTCCAGTCAGgtgtgaagagaaaaaacaaaatgggccAGCTGCCTTGTGCATTTGGAgatttccttttgtatttgtctttactGATGTTGCTGCTACTCCTTCATCCTCCAAATGTGTCCCTGCTCATGACAAAATTCTCCTCTCCCACCCAAGTTGGTCTGAGACAAACTGCCAGATTTTCATGCCATGAAATTAGTGATTTGAGTCAAAAGACATTATTGAAATTACCCAACAGGCTTTGAAATCTTTATGGTGCAGTCCAAAATGTACTTCCCGTTTTCCTTCCCATGTGGACAAGCTCttctagctttttttttaattattattatttttaagcttttatGGCATGCAAAATTCACTGTGCACTTATGCACCCTGTTGATGAGGTCTAGTCTTTTAAGAAAATGATTACAAAAGCCTTTCAAAACCTCaaatttaaattggaaaatgaatggagaGCATAGAAATTAGGCCCCTGAGGCCTGGGTATGTGCATTGCTGTAGTTATAAATTCAGATGACatacatttattgttatttgtaaatgtttttttaattctgtggaATTACGGAATAAAGATAGGCCTACATGACACTTCTCTTAGACATGGTAAATGCATTGTTTGATTGTGGCAAAGACCACATTAATCTGGATAATCCTATACAATTATTCatcccattcattttcaaatgttcaattAATGATAATGTGGGAGAAACCAGGCTTTGTGTGCCATAGTATTGAAATGTCTTTTGAATTGAGAGAATTTTGTTTACAGCCATATTGTTAATCTTTGATGGTGTTTTCACTGAAGGACCATTAATTTGTGTAAGAAAGGTGAATGATTTACTTTGGCACTGCCTTTATGTGCCACAGATccattctgtattattttttattcagttcaGTTACTCCAGAATAATGTAGTATAGTAGggtaataaaatgcaataccaTTCCCTTCCCAGCAGATGGTAGGCTACCATTGTGCTGAAAGCTGGTACATACAGTACTTTCACCCATACCATCTGTTgatctaaaataataatctcgCATGGGGGAAAATAAAGTAGATTACATTATTCTTTctcagatattaaaatataaaacctcCTGTTTTGCCTCCAATTGCATTCCAGTTTATCCAAAGAGCCTTTTAAATTCCCAGAAAGCATGCAAACCAGGATTATTTTTCCCACTGTTACATATTTAGACATAGGATATCACTTCCCTTCTGTTAAATAGAAACCTctactgataacatttttaaaatgtgttttgtgattaACTTCGATACTGTAATGTTACATTTCCATTAACATGAATGGTTGGTTTTATGAATTAGActgttttatagatttttgtatcttgtatttgtatttgtgtaggaCTCTGgaacatatacagctctggaaaaaattaagagaccactgaaaaattatcagtttctctggttttactatttataggtatgtgtttgggtaaaatgaacatttttgttttattctataaactactgacaacatttc

Function

NR:

description
PREDICTED: microfibrillar-associated protein 3-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011514 True 3003 mRNA 0.41 2 27891757 27895311

Neighbor

gene id symbol gene type direction distance location
AMCG00011509 NA coding downstream 178800 27712140 ~ 27712957 (-)
AMCG00011508 galnt10,LOC106603494 coding downstream 212611 27669795 ~ 27679146 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding downstream 252277 27620509 ~ 27639480 (-)
AMCG00011506 sp30l,sap30l,LOC106603970,LOC105890504 coding downstream 284769 27598114 ~ 27606988 (-)
AMCG00011503 NA coding downstream 361804 27497309 ~ 27529953 (-)
AMCG00011515 NA coding upstream 21622 27916933 ~ 27953143 (-)
AMCG00011517 NA coding upstream 128919 28024230 ~ 28025901 (-)
AMCG00011520 rars,LOC106568002 coding upstream 902919 28798230 ~ 28816286 (-)
AMCG00011521 wwc1 coding upstream 928347 28823658 ~ 28851487 (-)
AMCG00011522 NA coding upstream 978822 28874133 ~ 28880153 (-)
G107411 NA non-coding downstream 3988 27887467 ~ 27887769 (-)
G107409 NA non-coding downstream 8177 27883048 ~ 27883580 (-)
G107406 NA non-coding downstream 46750 27790895 ~ 27845007 (-)
G107383 NA non-coding downstream 276019 27613935 ~ 27615738 (-)
G107348 NA non-coding downstream 341890 27547207 ~ 27549867 (-)
G107471 NA non-coding upstream 667756 28563067 ~ 28563577 (-)
G107503 NA non-coding upstream 770851 28666162 ~ 28666386 (-)
G107597 NA non-coding upstream 1037526 28932837 ~ 28933182 (-)
G107602 NA non-coding upstream 1038986 28934297 ~ 28967451 (-)
G107638 NA non-coding upstream 1307254 29202565 ~ 29203192 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 1375250 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 1872357 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 2873425 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 4056683 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 4074214 23813857 ~ 23817543 (-)
G107713 NA other upstream 1729773 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 1990905 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 2296262 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 4235183 32130494 ~ 32205554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G153285 NA non-coding CI01000029 null 2839378 ~ 2839661 (-)
eurasian perch (Perca fluviatilis) G129308 NA non-coding NC_053123.1 CM020920.1 36152859 ~ 36169382 (+)