AMCG00011515


Basic Information

Item Value
gene id AMCG00011515
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27916933 ~ 27953143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011515
AACGCTTATAGCTTTAATgatgATGAAGTTTATCCCTCCTGCCTTCCTGTAGTCTGTTTACGACAATCTAGTTGCTGTACGGCTGTCGTTCTGTTTGTTGCAGCGGCATGAGCAGTGGAGAAGGTCCCATTCCTAACAGCTCGGCAGCAACGTGTTGTATGATGAACTTCAGAGTCTAATTTGATTGAATGCTATTGTCTGATTTACAATGCCCGAGAGACTTCTGCCAGCGTCTCCCAACTGGTACTGCTCCAGGTCCAGTGACGCGAATGCCAAGGGAGTGTTTGGATTTGGGGCTAAAAACTCAGTATATCTTATTAGCATCACTTCATCGTCGCCTGTTGTCGTGGgTGAACTGATAGGCCACAGAGAGCGTGTATCAGGATTCACCTTTTGCCATTATCTGGGTCAAGAAGATCTGTGCGCCAGTAGTTCTGATGATGGGACTGTCAAAATCTGGGACTGTGAGAGAAAGATTATGCTTAAAGAGCACAGAGCTCACCAGAGTACCATAACTGCTTTGCACTGGTCCCCACTGGAGAAAGACCTGGTGGTTTCTGGAGACGAGAAAGGGGTCGTCGTTTGTTACTGGCACAATCGTAATGACACGCAAAGCTTCTTCCCGGAACCAAGGAATGTCTTTTGTTTGTCCTGTTCCCCTCACAATGAAAACTACATCGCTGTGGGGCAAGTATTCCGATCAGTTAATGCCATGGCACTGAGTCCAGTGTTTGGATCTCTGTACAAAGATGGGATGATTATTGTGATTGACATAAGTAAAAAGAATGAAGTCGTGCACCGTCTGAGAGGCCATGACGATGAGGTCCATGCCCTGGCTTGGTGTCCTGAGCCTGGGGAGGAGGCTTTGCACAGCCGTCCAGAGGAAGGGACAGAGGTAAACAATGGGCTGCTAGGGGGATGTGAGAGAGGCTGTTACCTGGCGTCAGGAAGCAAGGACCAGACTGTCCGCGTGTGGAGCACAGCAAAGGGGAAAGGGGTGATGACGCTGAAACTCCCATTCCTGAAGAGAAGAGGAGCTGGGGTCGACCCCGGGGTGAAGGAGAGGCTCTGGCTCACAGTAAATTGGCCTAAGGGTCATCCTACACACATCGTATCCAGCTGTTTTGGTGGGGAGCTGCTGTCGTGGGACCTTATGAAGAATGGCAAGCAGAAGTGGACTCTGCTGGGCTCTGCATCCGAGGGCCAGACTCACTCAAGGATTGTCTTTAACATGACCTCTGTGTGTGTCGAGGACAACAGGGAACTTCTCATCAGCATTTCAATGGACAGAGAAATTAAATGCTGGGACTTGTCTACCCTAGAGTGCTGCTGGACCCTGCCATCCCTCGGCGGATTTGTGTACGCGCTGACCTTCTCCCCCGTGGATACAGGTTCCCTGGCCGTGGGTGTTGGAGACAACATGATCCGAGTGTGGAGCACTCTGTCCATCCAGAACAAGCATGACACCAAGACCTTCTGGCAAGGAATCAAATCCAAAGTCACGGCGctGTCCTGGCACACACTGAAGGAAGGCTCTCTGGCATTTGGAACTGATGATGGCAAAGTTGGCATTTATGAAGCTTACTCTAACAAGCCCCCGCAAATATCCAGCACTTATCACCGAAAGACTGTGTACACAGTGGCCTGGGGACCCCCAATACCCCCCCTGACATTTGGAGGGGATGGAGACAAGCTGTCAGTCGCTCTGTATAGCTGTGCGGGAGAAGGAGTCATCTTTCAACACAACCCCTGGAAATTGGCAGGAGAAGCCAGTGACATTGATAAAGTTATTCGGGACACAAATGGCATTAAGCACAAATTATCACCACACACTGATCTCAGCTGGAAACCAGATGGCAAAATACTGGCTATTGGGAATGAAGATGGGTCAGTAGATGTGTTTCAAGCTCCAAATCTCAAGTTGCTGTGCACCATTCAGCAGCACCACAAGATCATCAATGTCATTTGCTGGCATCATGAGCACGGCAGCCAATCAGATCTCGGTTACCTGATAGCTTCCGGGTCAAGCAACGCAATTGTGTATGTGCACAACCTCAAGACTGTAATAGGCAATCCCAAGATCATTGTGATTGTCTGGGTACTGGAGACCAGCGGCATGGAGTCTCCACCAGAAAGCCCTGCCCTGATTACAGAACCCTACAGAAGCCTCGTGGGACACACGGCAAAAATCACCAGCCTGGCCTGGAGTCCTCATCATGACGGGAGGCTGGTGTCCGTCTGTTATGATGGGACGGCACAGGTGTGGGATGTGCCGCAGGAGGAAGCTGTGTGTAACTACAGGGGTCACAAAGGTCGTctgctgtgtgttcagtggtCTCCTGTAGACCCCGATGTGGTTTGGACGGGAGGCGATGATTTTACTGTACAAGAGTGGGCCGTGTCAAAGCAGGAGCACACCAAACCTCCAAAAGGAAAAAAAGGCATTGACCTTGAGAAGAAGAGATCATCCCAGCAGAAAGTGAAagccaagaagaagaagaaacagatGACAAGCAAAGCAGGCAGTAAGCCACAGGATGGCGAGGTTACCAACGGTGAAGGGGAGGGTCGACACTCTGTGGGACTGGAGGAGGGGCCTTCAGacctggaggaagaggaggagaaagagagagaggctggaccTCAGGCCACAATGAGCACTCCAATAGCGGAGATCCCAGTGAAGAAGAGGAAACCACGCTCATTGCTTCCTCTCAGCACAACTATGGATCACAGGCCTAAAGAGGAGCTCCAGCAAGATTGCCTGACTCTCGCTGCCATCAGACATTCAAAAGGCAAGCTGGTGTTGCCGAGTCAGTGTGTGCCAGGATCTGGGGACCACATTCAGCTGGGCCTTTTTGGTGACAGGAAAGCTCTCTACCAGATGTTTGAAGAAGAGGGAAAGAGCCACATCGAAGGAGGTCACTATGACTCTGCCATATACCTGTTACTGTGGAAAGGAGATATCACAGGAGCTCTGCAAATGGCAACTGAGAAGGGAGAGCTAACAGATCACTTAGTCTCTATTGCCCCCATGGCTGGCTATCAGGTGTGGTCGCGGACTGTGGAAGCCTTTGTGAAGCAGCTGTGTTTCCAGGAGCAGTTTGTCAAGGCAGCCTCTTACCTCCTCTCTATTCACAAGGTTTACGAGGCTGTTGAGCTTCTGAGGTCCCGCCAGCTGTACAGGGAAGCCATTGCATTGAGCAAGGCTAGACTGTGTCCTGAAGACCCTGTTTTGAAGGATCTCTATACCGCCTGGGCAGCTATCCTTGAGAAAGATGGCCATTACTCCACAGCGGCTAAATGTTATCTAGCAGCGGACTCTGCCTTTGATGCTGCCAAAGTGATCGCCAAGAAGGGAGATGTGGTGTCCTTAAGAGCAGCTGCAGAGCTGGCCCTGATTGTGGGTGAAAAGGACCTGTCACATTCCCTTTCCCTGCGATGTGCAAAAGAGCTGCTGTCTGTTCAGGATTGGCTTGCAGCCCAGGAAGTACTCCAGACACAGGAAAGCTTATTGGGTCACCAGCTATTGTTTTGCACTAATGAGTTGTTGTGGAAAAGCCTGGCAGACACAGCTCTCATAACCTGGAGCAGTACTTCAGCTCACAGCTGGATGGCAATCGCAGATGATGGGTTTTTGACCGCAGTGAGTGAAGTGTGGGTGAAGGAGTTTGGTATCTCCCCTATTGACAGTGAAAAATTAAAGCTACTCCACCAGCAGCTGAAATCCATGGAGAATCCTCCTGCCACTGTGAATGTACCCATCAAACAGCTCTTGTTCCACTTATCCGTTGACCTGACCCTCACCCTGTTGAGCGCTCTGGCAGGGTCCTGGGGAGAGATGCTGGAGGAGATGTTGTGCGCTCTGTCCCGCTGCAGAGACACTGGACACTTCATTCTCATGAAGGAGATCTGTGGGCTACTTTTTCCAAAGGGGACTGAATCCATCTCTAATTTCAAAGGGAAGCTAGACCTCACAGATGAAAAGAGCATCTCCGCTGCTCAAAGCCTTGAGGCCTTCATATGTTACCTGAAGTTGTATGAACTGTGGTGGACTAGCAGCAGTGAGCACACACCACTTTTGCCAGAGGAGACCATCGCTGCTTCTACTGCTGCTTCTCACAACGATGAGCCTAATGGACCCGACCACATCGGTGGTGCAGGAGCCGAGGATGAAGCACCCGACGATGAGTGTTCTGCTAAAGAGATCCCAGATGTGCTGGCAAGTGCTGCTGAACAAGAGAAACCAGAGCGCCTAGAAAAGGCCCAGTGTGTGTTGACCTGCAAGGCATGTCTGTCTGAACCACACGCCATGTTACAGGCGTGTGAGAGGGCCAAAGCCGAGGTGCAGCATAGACTGTCCAACATGGTATACCACCACCTGAAAAACCAAGGGGACCAACACAAAGACCATCCTGCTGCCACACAGACCGAAAACGACACCCCAGCCAGCGAACCTGCACTGAGtgAGGAACATGCATCTCTGCCTTCCTTGATTGCCCTAGTGTCTGAACATAATAAACAACTGGCTGAAATTCCTGAACACGTCAAGGAACACCCCTTCCCAGATGTAATGGAGTGCTGCCTTATCCTTCTTCATATGGCCCGAACCTCAGAAATCCCTGTTGACCTGCAGAAAGAGGCTTTAGCTCTTGTCCAGAAGTATGGAACTACACATGCACTCCGCAAAGCCTGTCAGAAATTCCTAACACCAGATTGTACTGGAGAAGTACAATGTACTGAGGACTAGTCGTATAATTTCAGAAATCAGAAACTACATAACATGGCAAGCCTCGGACAGCATCATCTGTCTGTTTTCTAAGTGTGTacataaatttaataaaatttcAATTCAT

Function

GO: NA

KEGG:

id description
K13133 GEMIN5; gem associated protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011515 True 4856 mRNA 0.50 29 27916933 27953143

Neighbor

gene id symbol gene type direction distance location
AMCG00011514 LOC105893206 coding downstream 21622 27891757 ~ 27895311 (-)
AMCG00011509 NA coding downstream 203976 27712140 ~ 27712957 (-)
AMCG00011508 galnt10,LOC106603494 coding downstream 237787 27669795 ~ 27679146 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding downstream 277453 27620509 ~ 27639480 (-)
AMCG00011506 sp30l,sap30l,LOC106603970,LOC105890504 coding downstream 309945 27598114 ~ 27606988 (-)
AMCG00011517 NA coding upstream 71087 28024230 ~ 28025901 (-)
AMCG00011520 rars,LOC106568002 coding upstream 845087 28798230 ~ 28816286 (-)
AMCG00011521 wwc1 coding upstream 870515 28823658 ~ 28851487 (-)
AMCG00011522 NA coding upstream 920990 28874133 ~ 28880153 (-)
AMCG00011524 NA coding upstream 1019082 28972225 ~ 29043557 (-)
G107411 NA non-coding downstream 29164 27887467 ~ 27887769 (-)
G107409 NA non-coding downstream 33353 27883048 ~ 27883580 (-)
G107406 NA non-coding downstream 71926 27790895 ~ 27845007 (-)
G107383 NA non-coding downstream 301195 27613935 ~ 27615738 (-)
G107348 NA non-coding downstream 367066 27547207 ~ 27549867 (-)
G107471 NA non-coding upstream 609924 28563067 ~ 28563577 (-)
G107503 NA non-coding upstream 713019 28666162 ~ 28666386 (-)
G107597 NA non-coding upstream 979694 28932837 ~ 28933182 (-)
G107602 NA non-coding upstream 981154 28934297 ~ 28967451 (-)
G107638 NA non-coding upstream 1249422 29202565 ~ 29203192 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 1400426 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 1897533 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 2898601 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 4081859 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 4099390 23813857 ~ 23817543 (-)
G107713 NA other upstream 1671941 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 1933073 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 2238430 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 4177351 32130494 ~ 32205554 (-)

Expression


Co-expression Network