AMCG00011517


Basic Information

Item Value
gene id AMCG00011517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 28024230 ~ 28025901 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011517
ATGAGATTTCACTCGATCTTGCCCTTCATGGTGCCTGCAGCGCTGGTGCTCATGGGCTGGTGGTGGTATAAATCACGCAACCAGGAGCCTGGCGCCAGGACCGACATGGAGGAAAGTGCTGAAGAGGGGCTGCCCGAGACCCCCAGCCTCATTGCCTCCTCCAGTGGAGACAGCGACTCCATCATGGAGCAGAGCCTCTCCCAGGCAGAGGAAGGTGCAGAAGTGGAGCTGCCTGAGACCCCCAACCTCACCGCCTCCTCCAGCAGAAGACAGCGGCTCCATCATGCAGTGGAGCTGCTCCCAGGAGACCAGCCAAAGTTCTCTATGGCAGAGCACATTTTTGAGTCCCTGAACTACCTCGAGGAGCTGCAACCCGTGACGGGTCCCCCACCAACAGAGATTAGGGGGCAGCAACTCAAGGAGTTCAACTGCGTGGCCGTTCTGTGGTGCGGGGGCTTCGGAAAGCTGCAGAACCTTCTGCTGGATGGACACAGCTACGTCAAACTCAGTGACTTTGGCCTTTGCAAAGAAgGGATGGGAGTCAACGACCGGACTAATACCATGTGTGGGATGCCCCAGTTTGTGGTGCCAGAGCTGCTGACCGAAAGGTACTACACCAGGGCCGCAGACTGGTGGGCTGTGGGGGTTCTCCTCTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011517 True 657 mRNA 0.58 5 28024230 28025901

Neighbor

gene id symbol gene type direction distance location
AMCG00011515 NA coding downstream 71087 27916933 ~ 27953143 (-)
AMCG00011514 LOC105893206 coding downstream 128919 27891757 ~ 27895311 (-)
AMCG00011509 NA coding downstream 311273 27712140 ~ 27712957 (-)
AMCG00011508 galnt10,LOC106603494 coding downstream 345084 27669795 ~ 27679146 (-)
AMCG00011507 galnt10,LOC103022003,LOC100711410,LOC102207837,LOC102305690 coding downstream 384750 27620509 ~ 27639480 (-)
AMCG00011520 rars,LOC106568002 coding upstream 772329 28798230 ~ 28816286 (-)
AMCG00011521 wwc1 coding upstream 797757 28823658 ~ 28851487 (-)
AMCG00011522 NA coding upstream 848232 28874133 ~ 28880153 (-)
AMCG00011524 NA coding upstream 946324 28972225 ~ 29043557 (-)
AMCG00011528 NA coding upstream 1183439 29209340 ~ 29222205 (-)
G107411 NA non-coding downstream 136461 27887467 ~ 27887769 (-)
G107409 NA non-coding downstream 140650 27883048 ~ 27883580 (-)
G107406 NA non-coding downstream 179223 27790895 ~ 27845007 (-)
G107383 NA non-coding downstream 408492 27613935 ~ 27615738 (-)
G107348 NA non-coding downstream 474363 27547207 ~ 27549867 (-)
G107471 NA non-coding upstream 537166 28563067 ~ 28563577 (-)
G107503 NA non-coding upstream 640261 28666162 ~ 28666386 (-)
G107597 NA non-coding upstream 906936 28932837 ~ 28933182 (-)
G107602 NA non-coding upstream 908396 28934297 ~ 28967451 (-)
G107638 NA non-coding upstream 1176664 29202565 ~ 29203192 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 1507723 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 2004830 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 3005898 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 4189156 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 4206687 23813857 ~ 23817543 (-)
G107713 NA other upstream 1599183 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 1860315 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 2165672 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 4104593 32130494 ~ 32205554 (-)

Expression


Co-expression Network