AMCG00011523 (rab24)


Basic Information

Item Value
gene id AMCG00011523
gene name rab24
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 28951310 ~ 28967738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011523
CGATGCCCTTCAGTTCCTCTTTAACACCGACAGCGCTGCCCATTTGTGCCGGTTAACAGCAGTACCTGAAATATGGGCAGTGCTTAAAATATTCACAGCTTCCCTAAATAATGTAGATTTTTAATTCGTATTGATGAAATACGACGGAAAGACGGTAACTTAAATGCAATTGAACCCGAGCGGCCCCCTGTTTGCAGTAGGGGTGCTACACTAAATCGGATGCTGCTTGCTGATGATAGCTCATCTCTGGTACGCATTAATGCCGACTCAGGCTGGAACTCACAAATTGTGAAATTTCTGAGACCTTAACTTACAACACAAATGTCAAATTGAACACTTGTCGTTAACAAGTAAAAAAATGGAAACTAAACGCGTATAGATTGAAGgctgttttttcttccaaccCATTGTCCTTCTCTGCTGCTATGCAACAGATTAAAGCAAGAGCAGTGTTGTGAGCTGTGCCCTTCCCCCAACCCAGTTCTCTCTTAAAGACCCCCGCCCCAGACCCCGTCTCCCCTCTCCCATCATGAGTGCCCAGCGTGTGGATGCCAAGGTGGTGATGCTGGGGAAGGAGTGTGTTGGCAAGACCAGTCTTGTGGAGAGATATGTGCACAATCGCTTCCTCATGGGCCCTTATCAGAACACTATTGGAGCAGCATTCGTTGCCAAACCCATCCAAGTGGGAGAGAAAGTAGTGACACTGGGAATATGGGACACTGCTGGTTCAGAACGCTATGAAGCCATGAGCAGAATCTACTACCGGGGAGCCAAAGCAGCGATCGTGTGCTATGATCTGACTGACAGTAGCAGTTTTCAGAGAGCCAGGTTCTGGGTGAAGGAATTACAGAACTGTGAGGAGCACTGCCGAATTTACTTGTGTGGTACAAAGAGCGACCTGATACAGGGAGACCGCAGCACCAGAAAAGTGGACTACCACGACGTTCAGGATTATGCAGATGAAATAAAGGCTCAGCTGTTTGAAACTTCAAGTAAAACGGGGAAAAATGTTGATGAGCTCTTCCAGAAAGTAGCAGAAGATTACTACAACAGCAGCTCCTTCCAGCTCATGACAGAGGACAAAGGTGTGGACCTGGGCCAGAAAAAGGGCTCCTATTTTTACTCCTGCTGCCATCACTGACCTGGGACAGGTTCAAGACCAAGGGGAAGGGAAGGGCAGAACCAGCTGAAGCttcaggctttaaaaaaaaataaaaaaaaaatttgttatttgcatttccagttctgaaaatatatgaacaaaCAACTTGCTCAGCAAGGTGAAAAGACTAAACCAGACTCCAGATAATCCAGTTGTGGAATTGaccatttttaagttttgttttttccccttcccccTGGAACAAAGCAGTGGACTGAAACATTAACCTCACGATTGCCTTCCTCCTCTGAATGCTCTTTGTTTAGATAAGCaaagagaaaagggaaagacatttttaaactggaattgtgaagcagttttatttatagtgacttgcatttttttttttgtattattggcCTTATTGCACTGAAATGAATACAGTCTATACTTCAATGGCCTGTGATCTAGAATAgtcttattaatattatatatattcagtttacAAGGGTATGGGCTTTAATTGGCTTTTTTTAATCCCTTTGCCCTATAATTTGTCATTTCCTCTGATTTGCTCTTTGGTTTATCAACTGAAATACAGAATGGTGCATGTTCAGAGTATTTATTCGAGTGAACTCGgtcaaaataaaacttttaatcCAAACCTCCACTGCCCCAAGAGAAAGGTGGAGTAAACTGGTTTAGAGAAAGAAATCAAGTTTCCTCCATCAATCTTTACTGCTTGGTATTTCAATATTTGACTTGACTTCTCGTATAATATTTCATACACAGGTTAGCTGGGTTAGAGCTATTTTGTTTAGTTCCCCCCTAGTTTTCTTTGGTATAAGGATATTCACTTAGTCATTACAATGCTTTTAGTTCCTTTGTGGATTCAAAAAGACCTCACAGAAatcagtcattttaaacatttagtgCCTTATGgtacaaaccaaaaaaagcatTATCACCACCATCCCTTAAACATTCtaaatttaacaatttaaccaTCTCACTTCTGTTTATTTGCAAACAGTGATGTTGATTTCACAGCCTTAAACATACGATCAGAGATTAAAATCTCAAagccattttgaaatgtacaatcAAGATAAAGCACCCGAGTATGTTTATAGTTTTTTCTACCATATTCTATCAACTTATTTTTACCAACTTATCAACTTGTTGGCTGGGGTAAGGAATATTTAAAAGCATCTGAAGCTATAACCTTAGTTTCATAGTTAATTTCTTCCTTCACCTTTTGCCTTTTATGATTATGTATAGAACATTGGCTAATTTCAGGGAtgtaaaacaaaccatttacaAGGACTGCAAGACTTCTACAGTACTCAATGATGGCAAAACTGATTAATGAAGAACAACTTTGAAAATTAGAAATAGGATCAACGAAAAGGTAAAGAGGCAGCATACATCCAGCAGGGCAAGTTTAATTACCCCTTCTTTATAAATGATGAAAGGGTGAGTATAtattctaaaaacaaataagcttAAGTGGTTGAGACCACAACAAACACAGTGACCTAACAGGCTTTATCACAAACTGGATATTTTGTTGGCATGAAACCTGTTGAAGTTTTAATTCAGACGTACTGGAATCTTGGCAACAAATAGTTCAAAGTTCATATCCAGGGAGATCTGATTGTGCCAGCTGCCTTACGTTAAAATCAGATATTTTGGGATGTATTTAGCATTGAATTTAAGAGTTTAGCACAAGGATATcaatttgtgtctttgtttatttagaaaaatattagttatatagatttatattttgttcctgAAAGGCATACATCAGGCAAAAGCACAACATTGGAGTACTTTGCAGACTGTCTGAACCCTTAGGCAAAATTCATAAAACTCAGAAAGCAAACTGTAATTTCTGCACCCTTTACTGCCTTTACTGCTCCGTTGTATCGGGAGCAAACAGTGGAACATTGACTGAAATCTGCTTGATTGTTGGGGTGAAACTGAGGTTGTGACAGCATTTTGTAGTGTTATTTGTGGTAAACCAAcctaaatgaaaacataataaaaaaggaattggGCTTCTTTGTAGTGAAATGTCCTGCTtacctttatatttattttggtcgATGTCTCCTGTCGTCGAAGACTTGGACAGCTGCAATAAACACCCCTTTTCTGAAAATCAATGTGTCACAGATGTTACCACATATTACATCTCAattgtggttttcatttgtattcatagTAAAGTTATACACATTCTACAAATGAAAGACTAAGGGATAAAAGGTAGTGAGGGAATGACTAATTGTGTAGATTGAATATTGTCAGTGTTCTGACTGAATCGCATTTAAAACTTACTAAAGAATGCTTACTATAATCAAACCCTGGTTATCACTTCTTTGCTCGAGCTAATCTAAAGCCACTGACCAAATGCATCCATTTTCTGGAGTTGCTTTTTCATAAAGATTTGCACCAAACTGGATAATCTCAATACTATTATTGAATAATTCATTGACTGcacacttttcattttgtttcagacTACACAACCAAAACCATTCGTTTTAGTTAATTTTAAGCC

Function

symbol description
rab24 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in autophagosome; endocytic vesicle; and endosome. Orthologous to human RAB24 (RAB24, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-24 isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07912 RAB24; Ras-related protein Rab-24

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011523 True 3671 mRNA 0.38 10 28951310 28967738

Neighbor

gene id symbol gene type direction distance location
AMCG00011518 NA coding upstream 161921 28777033 ~ 28789389 (+)
AMCG00011513 NA coding upstream 376969 28571622 ~ 28574341 (+)
AMCG00011516 NA coding upstream 394621 28548503 ~ 28556689 (+)
AMCG00011512 mrpl22 coding upstream 992387 27952299 ~ 27958923 (+)
AMCG00011511 LOC100196276 coding upstream 1035311 27908392 ~ 27915999 (+)
AMCG00011525 fgfr4,LOC106568015 coding downstream 151104 29118842 ~ 29139529 (+)
AMCG00011526 LOC106568009 coding downstream 254613 29222351 ~ 29274495 (+)
AMCG00011527 NA coding downstream 311651 29279389 ~ 29321857 (+)
AMCG00011529 dbn1,LOC107732329,LOC107692779,LOC107561701 coding downstream 404141 29371879 ~ 29417263 (+)
AMCG00011530 NA coding downstream 450185 29417923 ~ 29436718 (+)
G107530 NA non-coding upstream 87553 28795887 ~ 28863757 (+)
G107513 NA non-coding upstream 236821 28714123 ~ 28714489 (+)
G107502 NA non-coding upstream 284924 28666166 ~ 28666386 (+)
G107450 NA non-coding upstream 662919 28288150 ~ 28288391 (+)
G107408 NA non-coding upstream 1067914 27883095 ~ 27883396 (+)
G107618 NA non-coding downstream 113493 29081231 ~ 29161742 (+)
G107661 NA non-coding downstream 354226 29321964 ~ 29323626 (+)
G107672 NA non-coding downstream 517134 29484872 ~ 29490870 (+)
G107709 NA non-coding downstream 630263 29598001 ~ 29598243 (+)
G107712 NA non-coding downstream 657352 29625090 ~ 29625387 (+)
AMCG00011519 NA other upstream 74955 28869142 ~ 28876355 (+)
G107394 NA other upstream 1223443 27712206 ~ 27727867 (+)
AMCG00011488 NA other upstream 2108518 26818052 ~ 26842792 (+)
G107202 NA other upstream 2180096 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 2590535 26356167 ~ 26360775 (+)
G107741 NA other downstream 729863 29697601 ~ 29699419 (+)
G107784 NA other downstream 890232 29857970 ~ 29875476 (+)
G107858 NA other downstream 1204050 30171788 ~ 30212090 (+)
AMCG00011551 NA other downstream 2016241 30983979 ~ 31173789 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 3135135 32102873 ~ 32204915 (+)

Expression


Co-expression Network