AMCG00011525 (fgfr4,LOC106568015)


Basic Information

Item Value
gene id AMCG00011525
gene name fgfr4,LOC106568015
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29118842 ~ 29139529 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011525
gtgggggttataCTCCCCCCCCACTTCTCCCTTTCTTGAAGCCGATTGTTGTTCCTCTTGTGCTCATACTGCCTAGAGCCATGATCGGCAGCAAAGTGCTCGCAGCGGCTTTGCACTGTAACCGGAGAGTCGCTAATTGagatttcaaaatgctttagGTTCCTCCACGACAAACCATTAGCGAGCAGACAGCGAGCCGGGCAGAGCGGAGCAGAGCGAAGACTCACATCTGCTACAGGGTTACCATCCAAAGcgtgaatacattatttatacgTGTTGcagaagataaaataataaatcatatggACACAACATCTTACAGTGGAGTGCTGTTTTGGGGGCAAGAAGAGAGAGCAAAGGATTGTGCAGAATGCAAGGGAAGAAACGGGACACATCGACCCAGGATGTCTTGTTTGTGAAGGATTAACTCGTGTTTTCTCGTGTTCTCAAATCCCTTCGTCATAACAAGAAAATACCTTGAAATCTCCCACGTAGAAGACCGTTTTTGTTCCTTGTcgtgttttcttgttgttgtgtttttttggcaTTGGAGAGAATATTCAGCCCGGAACAGAAGGTGGACTTGATTCGGACTTTGCGCCGCTTTTCACGGATCAGCTTCCATTACAGCGGCTAAGTGGTATTGTTGTGGATGTATTTCTAATTTCGCCCCGGAGCCTTACTCTCCCCGCCGGGCCTCGGCGATCCCAAAGGTCGGCTGGGAAACAGTCCGGTATAAAGGACCCAAATGGGGGCTTTCGTTGCAAAAATTGATCTATTAGACTGAACTGAGGAATCACCAACAGCTAAGCCAGAAACAAGGTTTCAGTACATAAGCTAAGCCAGCCAATGCCACGAAACACCATCTAATGCCAATTTAAAGGCTGCAAGCTgccaccccaccaccaccattcCCACTTCATACAGGAGACACATACACATCACCTCTGAAAGATGAACCCTTTGTGTAAACTCTGCTTCTTCATCCTGAGCATAGCTGAAGGAGCCAAGCCTGTGGTTCTGGAAGATGGTCGACTGAAAGAGTCCAAACTCTCTCGGCCAATTCTTCAGTCTGGTTACCTCCAGAACACCACTGCATTGATGGGAAGCAATGTAGAACTGTACTGCAGAGTGTCCAGGACATCCAAGACCCGGCTCCAGTGGTTCAAGCGCATTGAGAAAGAGGGCAGTCACGTTGGGTCCGATGACCTTGTAGCTTTGACAgctGTCCGCATGAACATCTCTAAAATCAACATCTTGCATCTAAGAAACATCACACAGGGCAATGCTGGGGAATATGTGTGCACAGTAGAGAACTTTGCTGGCCGTTCCAGTCAGTCAGCCTGGCTCACAGTCTTACCGGAAGGCCCTTCTCAAAAGCCCACCTTCCAGGCAGATCTGCGTTCTCACACTAATGTTAAAGCAGAAGTTCCTGAGGAAGAAACAGTAGAGCACTTGCTGCTGGAACCTGGCGACGTTCTCAAACTGAGCTGCGACACCAACCGCACGGGCGGCCTGCACTGGTTCAAAGATGATACGCGGGTTGCCCACGGTGACCGTATCCAGATCCGTTCTGGCATCATGGAGATCTCCGAGGTGACGTACGAAGACTCGGGGGTGTACCTTTGTGTGGCTCGCGGCACGAGAGAAGTACTGCGCAACTTCACCATCACTGTCGTTGACTCATTGGCatctggtgatgatgatgaggacAACGATTTAGAAGACACAGTGAATGAGTCGGACGATGAACGACTATATTACACCAGAGCTCCCTattggacacacacacagcggaTGGAGAAGAAGCTCTACGCTGTCCCAGCTGGGAATACAGTCAAGTTCCGGTGCCCAGCAATCGGTAATCCATTGCCAGCTATCCGCTGGCTGAAGAATGGGCGTGAGTTCAGGGGAGAGCACCGCATCGGGGGCATCAAGTTGCGCCATCAGCACTGGAGTCTAGTGATGGAGAGTGTGGTACCATCAGACAGAGGGAATTATACATGTGTGGTAGAGAACAAGTATGGCGTCATCAGTCACAGCTACCTCCTGGATGTACTGGAGCGCTCACCACACAGGCCCATTCTGCAGGCAGGGCTGCCAGCAAACACCACCGCAATAGTGGGAAGCGACGTGCAGTTCTTCTGCAAGGTGTACAGTGATGCACAGCCCCACATCCAGTGGCTCAAACACATAGAGAAGAATGGCAGCCGATATGGGCCCGATGGTGTTCCTTATGTACAGGTTTTAAAGactGGCAGTCTTAACATGTCCGAAGTTGAGGTGCTATATCTCACTAATGTCACTGTGGAAGATGCTGGGGAGTACACCTGTCTTGCTGGAAACTCCATTGGCTTCTCCTTCCAGTCGGCCTGGCTTACTGTATTGCCAGAGGAAGAGATGGTTGATGAAGTGGACTCACTAGAGACCAAGTATACAGACATCATCATCTACGCCTCTGGTTCTCTGGCCTTGGTCATGGCCATTGTGATCGTGGTGCTATGCAGGATGCAGTCCAGCCCTGGCAGGGAGCCTTTTGACGTCCTGCCCGTACAGAAGCTCTCCAAATTCCCCTTGCGCAGACAGTATTCTGTGGAGTCCAATTCATCTGGCAAGTCGAGTGCCTCTCTGATGAGGGTGTCCCGCCTCTCCTCCAGCTGCTCCCCAATGCTGGCCGGTGTCATGGAGTTTGAGCTGCCCCTCGACCCCAACTGGGAATTCTCACGGGACAACCTGACCCTGGGGAAGCCACTTGGAGAAGGCTGCTTTGGCCAGGTGGTCAGAGCAGAGGCCTATGGGTTAAGCAACCCAACCCAGAGCAACCCAGAGCAAGTCTCCACAGTTGCCGTGAAGATGCTGAAAGATGATGCCACGGATAAAGACCTGGCGGACCTGATCTCGGAGATGGAGCTAATGAAAGTGATGGATAAGCACAAGAATATAATTAACCTTCTGGGAGTGTGCACACAGGATGGACCTCTGTATGTGCTGGTGGAATACGCCTCTAAAGGCAGTCTCCGTGAGTACCTGCGGGCTCGTCGACCCCCAGGCATGGACTATACCTTTGACGTCACTAAGGTGCCAGAGGAACAGCTAACCTTCAAAGACCTGCTTTCCTGTGCCTACCAGGTAGCAAGGGGCATGGAGTACTTGGCCTCCAAACGATGCATCCATAGAGACTTGGCAGCCAGGAATGTTTTGGTAACCGAAGACAATGTCATGAAAATAGCTGACTTTGGCCTGGCAAGAGGAGTGCACCAAATCGATTATTACAAGAAAACCACCAATGGACGCTTGCCAGTGAAGTGGATGGCACCAGAGGCCTTGTTTGACAGAGTCTACACACACCAGAGCGATGTGTGGTCTTTTGGGGTCCTGATGTGGGAGATATTCACTCTGGGGGGATCTCCTTACCCGGGAATCCCTGTGGAAGAACTGTTTAAGTTGCTGAAGGAGGGCCATCGGATGGACAAACCATCCAACTGCACACACGAGCTGTATATGTTGATGAGGGAATGCTGGCATGCTGTCCCCACCCAGAGACCCACCTTTAAACAGCTGGTGGTAGACCTGGACAGAGTTCTACTTTCAGTCTCAGACGAGTACCTGGACCTGTCGACGCCGTTTGAACAGTATTCTCCATCTTGTGAGGACAACTCCAGTACCTGTTCATCAGACAATGATTCAGTCTTTACTCATGATGCCTTGTCCACTGATCCCTGTTTCCTTGGTTACCATGATGTTCACTCCAGGATAAGGACCTGAAAATGTAtctatagctatatatatatatcaattccATATAAACTGCCTTCTTCTGACATCTACTATTGGGCATTATgtggaaagaagaagaaagatacAAAGACAGAACTTTCCACTATTATACAACATCATTTGATGTCAGCACAGCAACTGGCAGCATCATATTAGATGCTTTTACGTCTTGGTCCTCTTCTACTCAAACAAAAAGGATCCCCCCCCAGGAATGTGatattttgtgatattttagATCAAAGCTTTTAATGGAAACCCACAAGAAGAAAATGGACTGATAACTGCAATCACAGAACCAGTAGAgggaagagaaaagagaaaatatattttggtattataaAACAGAAGATGATAgaattgtgaatatatatatatcacacatgctatctgaaattaaaaaaaaatgtcttaaatcTCAGGATCTCTTGGTTTATGTTGCTACGGTGATGGCAAAGTGCCTGAATTTCTAATTTCCtgtgaatatattaaatttttaaattaatgttaatgtacaTATCACAAAGGAGAAGCAATTGTTAcctttttataaattattattattgaatgatGTGAGATGAAGGCGTTATTGAGGTGAAGAAATTACAATTTGCCGGCGTATAATTGTACTGGAATTAATATTGTTTGAACTATGCACAagaaaatctaaacaaaataaataaataaataaaactatacaattaCTCTCCTTTACCagcaaactttaaaaatatattttaatattacttgtATTAAAGCAATAAGGAATTAAATGCTGTTATGGTActacattaaacataaaaaacaaagcatatgTAAGTGAAAATATCGGTGCAGTATTATATAGCTTGCCTTTTAATGAAATTCCAAACCTCCATGACAATTCAGAGAAAGAATGGTTGCTATTTTAGCtactgtatgaaaaaaaaaatcgaattgaTCTGAAATCCAGCTTGATTCtgtgttgaaaacaaaaatggagtcgccttttgttttctgtaatctTTTAACCAGCACAGTTTGTGTTCCAGAGGCAGATAAAGGCCTCTCAAACAATGGGGTCTTTGTGGCTTTAATGGGTGTGACAGTGGGGCCGGCTGAATTAGGACTTCCAGTGCTTGTGTGCAGATGAATTGGCCTTATTATGTAAATGGCTTCTGCTGCCTGTCATTATTCGgtcacatattttaatatacaaatgcTAATGCTGtccttttcaaataattttcattGAATGTATGGGATGTCAAATTCCcctgaagaagaaagaaagagtccAGGGTTCTTATTAGGCTTTAAAAGGTGCATTTAAGTCTGGCCGTTAAAATCTCATTGTTTTGTACCAGGCTTGTAATGTATTGGTAACAAAGGTGTGTTCAAAGTACAACATCAGTGCTGGTACCAATCAATGCATGTCTTCttaaaagtgcatttttacctttttatcaCCCTTAGTGTGCAAGGACAAGTAGAAGAACTTTAAAATCTATTAAACCTAATAAAAGAGCGCCCTACAAAACAAGAGAATGAGAATGCAACAAAATACCAATCATTAAATGGAGCAGGCCCCAACACACCCATGTATGCTAGTTTGGCCTTGTGCATCATACAGAGCCTTGTGCTGATATTCACATGGGTtcatgtggggaaaaaatagtTCAATTATTTATCAGGATGATTGTTGTAAACTGGCAGGTCTCTCTAAAATAGTCTATAAGGAAATTGTGAACTGAATattgtgcattaaaatgtaGTCAATATTTTGTGCAAAAGCTGTTTTCAGATTATTAAAAGCTGTTTTCTAGTTTAAGGcagctaaaaacaaacacagaacctGAACTAAAGTCAAgaatgaactgaaaacaaatgctagccaaaacactttaaaatttAAGTGATTATATCCATTTAATTCCTTGTTTGAACCCTCAAATATTTCATGTGATTTATAAATTATGTACAGCTTTGTACTATTGACAGATATGACCTGTTTGAAATGCATGACATTCCATTTGTAAACTCCAGTACAGCTGTAACAGCCCCAATGTCCTTGGTTTTAGACCtacaaaatagtattttagacatatttaatttatttgttttattttgttttatataaaataaaatatatcctaattttaaaacaatcttgaCAAGttcttttattattgtgtgtccTCCTTGTTTCCTACCTCTGTAGAGTGTTTTGAAGTTTTCAGTGAACTATGGAACTTTCAAGTGGCATTATAATGATCCTGTCACTTATTAACCTATTTCGCTATTGTGATAACACAAtggtatattattttcttaaattgtaaaatgttataaactagtgtaaaatatttaaaatcctgtGAACAGGAAGCACTTTGATTACAAGTGGTTAAATGAACATTCCAAACCTCTGTAATAATCCTGAAATTATTACAAATGTGCATCTTATTAGACTTGTTTGTCTCTGTGGACCACAGATTGGAAGACAATATTAAGGCTGAGAGAATGTTTTAGATTGGTAATGTCTGTAAGAATCCTAGTTCCTGAGTGACGGCTGTTGATTAGG

Function

symbol description
fgfr4 Predicted to enable ATP binding activity; fibroblast growth factor binding activity; and fibroblast growth factor-activated receptor activity. Acts upstream of or within regulation of hematopoietic stem cell differentiation. Predicted to be located in endoplasmic reticulum; endosome; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; digestive system; head; and head mesenchyme. Orthologous to human FGFR4 (fibroblast growth factor receptor 4).

NR:

description
PREDICTED: fibroblast growth factor receptor 4-like

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0005768 endosome cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function

KEGG:

id description
K05095 FGFR4, CD334; fibroblast growth factor receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011525 True 6337 mRNA 0.43 21 29118842 29139529

Neighbor

gene id symbol gene type direction distance location
AMCG00011523 rab24 coding upstream 151104 28951310 ~ 28967738 (+)
AMCG00011518 NA coding upstream 329453 28777033 ~ 28789389 (+)
AMCG00011513 NA coding upstream 544501 28571622 ~ 28574341 (+)
AMCG00011516 NA coding upstream 562153 28548503 ~ 28556689 (+)
AMCG00011512 mrpl22 coding upstream 1159919 27952299 ~ 27958923 (+)
AMCG00011526 LOC106568009 coding downstream 82822 29222351 ~ 29274495 (+)
AMCG00011527 NA coding downstream 139860 29279389 ~ 29321857 (+)
AMCG00011529 dbn1,LOC107732329,LOC107692779,LOC107561701 coding downstream 232350 29371879 ~ 29417263 (+)
AMCG00011530 NA coding downstream 278394 29417923 ~ 29436718 (+)
AMCG00011533 NA coding downstream 504639 29644168 ~ 29651012 (+)
G107530 NA non-coding upstream 255085 28795887 ~ 28863757 (+)
G107513 NA non-coding upstream 404353 28714123 ~ 28714489 (+)
G107502 NA non-coding upstream 452456 28666166 ~ 28666386 (+)
G107450 NA non-coding upstream 830451 28288150 ~ 28288391 (+)
G107408 NA non-coding upstream 1235446 27883095 ~ 27883396 (+)
G107661 NA non-coding downstream 182435 29321964 ~ 29323626 (+)
G107672 NA non-coding downstream 345343 29484872 ~ 29490870 (+)
G107709 NA non-coding downstream 458472 29598001 ~ 29598243 (+)
G107712 NA non-coding downstream 485561 29625090 ~ 29625387 (+)
G107714 NA non-coding downstream 486212 29625741 ~ 29626058 (+)
AMCG00011519 NA other upstream 242487 28869142 ~ 28876355 (+)
G107394 NA other upstream 1390975 27712206 ~ 27727867 (+)
AMCG00011488 NA other upstream 2276050 26818052 ~ 26842792 (+)
G107202 NA other upstream 2347628 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 2758067 26356167 ~ 26360775 (+)
G107741 NA other downstream 558072 29697601 ~ 29699419 (+)
G107784 NA other downstream 718441 29857970 ~ 29875476 (+)
G107858 NA other downstream 1032259 30171788 ~ 30212090 (+)
AMCG00011551 NA other downstream 1844450 30983979 ~ 31173789 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 2963344 32102873 ~ 32204915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_06250932_06258667 FGFR4 coding CI01000040 null 6250565 ~ 6259445 (-)