Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_006070 |
| gene name | cxcl12a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 30804367 ~ 30819715 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cxcl12a | Enables chemoattractant activity. Acts upstream of or within several processes, including fin regeneration; nervous system development; and regulation of cell migration. Predicted to be located in extracellular space. Is expressed in several structures, including brain; mesoderm; myoseptum; neural rod; and sensory system. Human ortholog(s) of this gene implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Orthologous to human CXCL12 (C-X-C motif chemokine ligand 12). |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0006935 | chemotaxis | biological_process |
| GO:0090022 | regulation of neutrophil chemotaxis | biological_process |
| GO:0090024 | negative regulation of neutrophil chemotaxis | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0051453 | regulation of intracellular pH | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0006952 | defense response | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:2000472 | negative regulation of hematopoietic stem cell migration | biological_process |
| GO:0050930 | induction of positive chemotaxis | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0048842 | positive regulation of axon extension involved in axon guidance | biological_process |
| GO:0030516 | regulation of axon extension | biological_process |
| GO:0106014 | regulation of inflammatory response to wounding | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0070098 | chemokine-mediated signaling pathway | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0048920 | posterior lateral line neuromast primordium migration | biological_process |
| GO:0035701 | hematopoietic stem cell migration | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0021730 | trigeminal sensory nucleus development | biological_process |
| GO:0008354 | germ cell migration | biological_process |
| GO:0030900 | forebrain development | biological_process |
| GO:0097535 | lymphoid lineage cell migration into thymus | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0001946 | lymphangiogenesis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0008009 | chemokine activity | molecular_function |
| GO:0042056 | chemoattractant activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030318-1 | Enables chemoattractant activity. Acts upstream of or within several processes, including fin regeneration; nervous system development; and regulation of cell migration. Predicted to be located in extracellular space. Is expressed in several structures, including brain; mesoderm; myoseptum; neural rod; and sensory system. Human ortholog(s) of this gene implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Orthologous to human CXCL12 (C-X-C motif chemokine ligand 12). |
| ensembl_id | ENSDARG00000037116 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00011983 | True | 3041 | mRNA | 0.36 | 4 | 30804367 | 30819715 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_006069 | cxcl18a.1 | coding | upstream | 104998 | 30696286 ~ 30699369 (+) |
| XLOC_006068 | CR762483.1 | coding | upstream | 108373 | 30692669 ~ 30695994 (+) |
| XLOC_006067 | NA | coding | upstream | 126724 | 30676825 ~ 30677643 (+) |
| XLOC_006066 | ppifa | coding | upstream | 228568 | 30572172 ~ 30575799 (+) |
| XLOC_006064 | zmiz1a | coding | upstream | 233508 | 30421472 ~ 30570859 (+) |
| XLOC_006071 | CR762493.1 | coding | downstream | 16941 | 30836656 ~ 30836776 (+) |
| XLOC_006072 | ercc6 | coding | downstream | 54438 | 30874153 ~ 30910016 (+) |
| XLOC_006073 | drgx | coding | downstream | 92402 | 30912117 ~ 30920265 (+) |
| XLOC_006074 | NA | coding | downstream | 100839 | 30920554 ~ 30928661 (+) |
| XLOC_006075 | vstm4a | coding | downstream | 131440 | 30951155 ~ 30967784 (+) |
| XLOC_006065 | AL844152.1 | non-coding | upstream | 292644 | 30511607 ~ 30511723 (+) |
| XLOC_006063 | AL929330.1 | non-coding | upstream | 552510 | 30251741 ~ 30251857 (+) |
| XLOC_006056 | NA | non-coding | upstream | 912547 | 29889189 ~ 29891820 (+) |
| XLOC_006054 | CT025909.2 | non-coding | upstream | 1048940 | 29755293 ~ 29755427 (+) |
| XLOC_006101 | NA | non-coding | downstream | 986805 | 31806520 ~ 31850508 (+) |
| XLOC_006102 | NA | non-coding | downstream | 1135505 | 31955220 ~ 31978484 (+) |
| XLOC_006103 | NA | non-coding | downstream | 1285550 | 32105265 ~ 32108472 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G74792 | NA | non-coding | CI01000012 | null | 9006633 ~ 9006790 (-) |
| striped catfish (Pangasianodon hypophthalmus) | cxcl12a | cxcl12 | misc | NC_047597.1 | CM018543.1 | 16124627 ~ 16134002 (+) |
| bowfin (Amia calva) | G6653 | NA | non-coding | CM030121.1 | CM030121.1 | 38858118 ~ 38859005 (+) |
