AMCG00011534


Basic Information

Item Value
gene id AMCG00011534
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29686185 ~ 29739369 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011534
ATGTTCCATATGATGGACTTCACTGTGGTGGAAGGGTGGCTCCTCTACCACAGAGACTATAGAGACCTAGGGCAGGTGATCTCGGCGCTGGGCCCTCTGCAGACTCCCCTGGGCTCCTGGGCTCCTCTGCGGGGACTGGCAGATGTCCCCTCCTCGTCTTCTCTCAGGGCCCCTGACTCCAGGCTCGGTTCTAGTTTGCTAGGGGCACATCAAGAGGAGAGAGTGTCCTTGTCTCTGCCAGGGTTTGAGGATGAGGATGTGGGACTCTCAGAAGCAGAGAGCTCATGTGGGACGGCTCACCTGCTGCACAACCTGCACCTGGAACTGGACTCCCTGGAAGGAGGACTGCAGTATGAGCGCATTTTTGGGAGCCTGCAGTGTTTGTTTACTGAGAGTGACTGTGTACTGACAGGAAGCGCCGTGTGCAGGgatctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgccgtgccgtgccgtgccgtgccgtacCGTACCGAGGCAGCAGAGACTGCAGTGAGGACAGCCTGAGCCGGGTGGCCtgttcccccaccccccagctcTCCCAGCCTGCCAGCCACACATCGCCCCCTCCTGAGCTGGGGGAGAgccagggagaggggaggggggctggAAGCGAGGGTTGGGGAGTAGAGACAGGAGTGGGGAGTGAGGATGAGGAGAAGGACAAGGTGGAGAGAGGGGAAGTGAGTGAGGTGGAAGTGAAGATTGGGGAAGGGGGTGAAGGAAAGGAGGAAGAGGTggaagagagaggggcagggagtgagggagaggaggaggtggacCCTAGGAAAGTGAGcaagggagaggaggaggagaaagaggaggaggtggtgttGGGGGAGAGAGGCACAGTGGGTgggggagagcaggaggaggaggtagagggggagagaggggaagagagtcaggtggaggaggaggtggtgagTGCCAGAGAATATTCAAGGAgcaagggagagggggaggaggtaGAAGCAAGGGAGAGATTCTGCAGGACAGCCTTGTCCCCTCTCTCTATGGCAatgagaagagagggagagcaggaggaggTTCAGGGAGAGGGGGGTGACCCTACTTCCCCTTGCTGGGACTGTCAGCCCAGGAGTGGAGGGTGTCCAGTCCAGGCCcccacagcaacagcagctgcagCCATAGCCACTGGGGCTCTTTGTTCAGAGTTTGTGGCAGCTGGGCAGGAAGAAGGGAGCCttgaggagaaggaggagaggaagagcaCAGAGGCATCAGAAAGGCAAATAAAGGAGTCTGGGAGAGGTGAGTCCAGGCCCAGGAGCCCGGGCAGTGAGGCCCTGAGTGGCTCGGAGCGGAGGCCGGAGGTGGAGGGAGGTAGTGGGAGCCTGGGGAGGAGGCCTGAAACAGAAAGAGGCAGGGCAGAGCCCACTGGCAAAGGAGAGAGCGGCCCCATCTGTGAGAGTGGGCCGTGGCCGGGGGGGTGCGCCGGGCCCAGGCCCTATCTGAAGGATCTGCAGCAAGAGACTGAGAGGCAGCTAGAGGAGGAGCGAGCCAGGGCCCTGCAGGAGAGGCAGGAGAGGCTGAGGGACCTAGCTGAGGAGctgaggagagaggagaagaaggaggaacAGAGGCTGAGGCAGGAGAACACTGATAGGATCCGGGCCTTGAGGGAGAGGCtgcagggggagagggaggccCAAGAGGCCAGGCTGAGGCAGGAGCACCAAGAGAGGCTGGAGGCCATCACTCTTTCCATTCAAACTGAGAGGAATGCCCGGGAACACCACctaagCCTGAAGCTGGAGGTGGAGGACGAGCTgagacaggagagacagaggcTGGAGGCCCACAGAGAAGCAGAGCTAGAGGATCTGAGGAGAGAGGGGAGGAGCAACCAGCGCCAGGCCAAGCTGGGGAGGAGCCAACAGACTGGACAGCAGCTCACTGCCTATCAGAGAGAGCTGGGTGAGGTGCTGAGGGAGGTACGGGAGGAAGTGCAGAAGGAGCATGACAGGAAGCTGGAGCAGCTGAGAGAGGATCACCTACACGCCCTGGAGAGCATCAGGGAGAGTCTCCTGGAGGAGGAGCAAAGGCAGAGAGACCGACTGCTAAGCTCCCtgcaggaggagaaggagagggtaCAGGCAGGCCATCAGTCCCAGTTGAAGGGGCTCCGCACGCAGCTGGACGCGCAACTGAATGAGCTGCGGCGCACTCACAGCCACAAGGAGAGTAAAATACAGGAGCTGGCAGAGGAGCTGGAACGCAGGGCCAAGGAGATGAAAGCCAGGAATGTAGCTCTGCAGACTCAGGAGGAAGACctgagaaggaggagagagcagctggaggaggaagaggagcagagGGAGAAAGGCCTGGATGAGGCAGACAGAGTGCAAGTGGCCAGAGACCACCTGATGCAGGACAGAGACAGGCTGATGGAAGAAATGGAGGAACTGACAGAGGAGAGCGAGAGACTGTGGGATGAGAGGAACAGGCTGAGGGAGGAAAGGGAGAAACTGAAGAAGGAGCGAGACGGGCTGCAGGAACAAGTGACTCAGTTGCAGGAGTGCTGTGACAAGCTGAGCAGGAGAGCCAGTGATGTGGAGCGCCTCCCCAGCCACAAGGAACCCCTTGCTGGCCAAGAGGACACTCTGCAGCTGGAGGACTTGGAGACCTCCCCTCTGCACCCCTCTCAGTCTGGAACAGAGGAGGCTGAGCAGCTGCTTGATCTCCCCCAGCTCAATGGGGGCCAGAGGGGCGGCCTGGGTCAGGTAGCTGAGCGGCTTCTGATGGGTGCTGGGCCTGGCGCTCGTGGGGCGGGTGGGAGGCTGAGTGATGGGGGGCTGGCTGGTGCTGCGGCGGCATGGCTGTCGTTCTCCTGCTGCAGGGCGCTCATCTCACTCCTCAGCTCCGTGATGGCTGCCCTGCTCTCTCTTGAGCTGAGTCACCTTGTCTCTGAGCTGCTGGTGAAGAAGATGAGGTTGCTTCTCATCCTCTTGTCTCCTGCCCGAGTGAAGTCTGTGTGCAGACACTCAGGGTTGCTCTTCAGCACCCCCAGTCTGTGCTCCTTCCTGGTCTTTGCGTTGCTGCCTCTGCAGCTGTCTGATGAAGATGCAGTGAAAGGGATGGCGGACAAGAAGGTGGTCACCTTTGACTTCAGCGATTCTGACATCAGCAGTATCAACGTTCCCAAAACAGCAGgTCTCAGAACCCCAGGCCCGCTCCCAGCAGTCCCAGCTAAAGTGCACCACCTGACTGATTCACTGCAGCAGATCTCCATGCAGCTCAACACTGTGCTGGAGGTCCTGGGATCTCAGCAGTCCCAGCTAATTAAAGTCCCTGCTCAGCGGCAGGCTCCCATCACCCCCTTCTCCGTCTACACCCCCCTGTCCATGCCCCTGTCCCGTGGCCACCACACCCCCTCACTGACCCCCTGGGCCTGGAGACCCCACCCCAGCTCCTGTGCCCTGGAGGACACGCTGGGGAGCCACCTGGGATACAACTCTGCCAGagAGCAGGTGTGCAGCCTGCGGTCAGGCCAGACCAGCACCGTAGAGCTGGACGGCCAGCGACTCCAGGGCCTTATCGACGGCAACAAGAGGTGGCTGGAGAGACGCAGGAAAGACCCCAAGGTACCACTGTTCACAAACACTTGGAACCCCCCCTCCATGAGTGGTTTGGTCCAGTTGGGCCTGGATGACAACAACCAGATAAAGGTCTACCACTACTGA

Function

GO: NA

KEGG:

id description
K16462 CEP164; centrosomal protein CEP164

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011534 True 3765 mRNA 0.60 25 29686185 29739369

Neighbor

gene id symbol gene type direction distance location
AMCG00011532 grk6,LOC107561710 coding downstream 172177 29491908 ~ 29514008 (-)
AMCG00011531 NA coding downstream 224975 29444603 ~ 29461210 (-)
AMCG00011528 NA coding downstream 463980 29209340 ~ 29222205 (-)
AMCG00011524 NA coding downstream 642628 28972225 ~ 29043557 (-)
AMCG00011522 NA coding downstream 806032 28874133 ~ 28880153 (-)
AMCG00011535 eif4ebp3l,eif4ebp3,LOC107587081,LOC107576657 coding upstream 228106 29967475 ~ 29982671 (-)
AMCG00011537 NA coding upstream 247690 29987059 ~ 30031892 (-)
AMCG00011541 LOC103365697 coding upstream 315463 30054832 ~ 30058232 (-)
AMCG00011540 LOC103365697,LOC102790792,LOC102213970 coding upstream 333249 30072618 ~ 30081138 (-)
AMCG00011539 LOC105907442,LOC105011305,LOC106603918,LOC108439787,LOC107700028,LOC107756157 coding upstream 434322 30173691 ~ 30181506 (-)
G107732 NA non-coding downstream 5159 29680810 ~ 29681026 (-)
G107728 NA non-coding downstream 13072 29671571 ~ 29673113 (-)
G107711 NA non-coding downstream 68447 29617521 ~ 29617738 (-)
G107705 NA non-coding downstream 128873 29556808 ~ 29557312 (-)
G107695 NA non-coding downstream 197705 29402035 ~ 29488480 (-)
G107765 NA non-coding upstream 47665 29787034 ~ 29787355 (-)
G107770 NA non-coding upstream 57286 29796655 ~ 29800616 (-)
G107786 NA non-coding upstream 92552 29831921 ~ 29875263 (-)
G107810 NA non-coding upstream 202869 29942238 ~ 29942490 (-)
G107886 NA non-coding upstream 428650 30168019 ~ 30168246 (-)
G107713 NA other downstream 60798 29625084 ~ 29625387 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 3169678 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 3666785 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 4667853 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 5851111 23829297 ~ 23835074 (-)
AMCG00011536 NA other upstream 146847 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 452204 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 2391125 32130494 ~ 32205554 (-)

Expression


Co-expression Network