AMCG00011539 (LOC105907442,LOC105011305,LOC106603918,LOC108439787,LOC107700028,LOC107756157)


Basic Information

Item Value
gene id AMCG00011539
gene name LOC105907442,LOC105011305,LOC106603918,LOC108439787,LOC107700028,LOC107756157
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 30173691 ~ 30181506 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011539
GTTGAGGCAGCACAGCAGAGAAACACCAACTAGGGGTGTCTGACATacctactgtatttttgtattcctgtTTTAAAAACCTGTTAGATATTGTACATCACCATGGCCACTCCACCAAAAAGAATGTGCATCAGCCCTACGTTTGACAACAGTTTTGATAAAAGAACGAAGAAAATTTCTATAGAGGGAAATATAGctGCTGGAAAGTCCACGTTTGTCCGCATGCTGGAGAAGGCGTCTGAAGAATGGGAGGTGATTCCAGAACCAATAGCGAAATGGTGCAACGTTCAAACCAATGAAGATCACTTTGAGGCAagtGAACTGAGCACCTCTCAGAAGAGTGGGGGAAACTTGCTCCAGATGCTGTATGACAAGCCCAGCCGTTGGGCCTACACCTTCCAGACCTATGCCTGCCTGAGCCGGGTTCGCTCCCAACTGCAGCCCCCCTCCGCCAAGCTGCGTGAGGCCGAGCACCCAGTGCAGTTCTTCGAGAGGTCCGTCTACAGTGACAGGTACATTTTTGCATCCAATCTATTTGAAATGGGAGATTTGAATGAGACGGAGTGGGCTATCTACCAGGACTGGCACGGCTGGCTGCTCAGCCAGTATGAGTCAAAGCTTGAGCTGGACGGCATGATATACCTGCGAGCCGAACCCATGAAATGCATGCAGAGGCTTCACCTACGAGGGCGAGAGGAGGAGCAGGGCATCGAGCAGGACTACCTGGAGAAGCTGCACTACAAACATGAGTGCTGGCTCTACCACAGAACCACACAagTCGACTTTGAATACTTAAAAGACCTCCCGATTCTGCTACTAGATGTAAATGACGACTTTAAGAATGACAAGATCAAGCAGGAAGCAATTCTTGACAAGgtTAAAGAGTTCATGAGTACTTTGTAAGACTTGAATGACAAGAGCTGGAAGACCTCTCACTTAGACCATTGTGTGATTGTGAGGCTTTTATTGAATGCAAACCTGGTTTAAATTAGCTGTATCTGTTTGGAGAAGGGTGGTAGTGTCAGTTAAAATACATGCTGGAGATATTCACAACTGTATCTGCAAAGAGGTCAGATGTTAAATGGAGGAATAGTCATTGCTGCTTAACAGGAGAAATCTTCAATTCAgttgtttcaaatattttaaagcttgaATAATGCAAATGATTCTTTCTGTAGGTCAGACTTTTAGAGAGAATGCATACACCTGCTACCCTAACCACACCTGCAAACCatttcaaaatctgaaatactcCCATTTCCACTTTATTTGAACTGTGGTTCTCTTAAGGAAAAAAGTAGCTAATTGAACTAATTCCATTATCTTGGAAATTATACCACCTTTTTCACTATTGTGTGACTGTTGTTTGATTGTGTAAGATGGCATTTTGAACACAAGTACTACAAAGTGGTGTTGGCTGTGCAAAATTGCATCTCTTACACATGCTTCATATGATATTAACTTCTTCAATTGCAGTTTCTACACACAAGCAgcttacataaatatttattatacaagGATAATATTTTCCTCTCATGGGTTGGTTACAGAGCTACCATATTAATTTCACCGGTCTATAgatgctgtgatttatttctcaGATTTTCCTCTGAGAATGGTGTCTTTCTGGTATGcaatatataatttgcaaacTAATGCAGAGCTTACACCTTCAAACATGTACTTTTATATATAGCAGGCATATTTATTGTGGACACTTACCCATTTCCTTTTTGTAGTTAACAAAATGCCTTACAGGTATCCCACTGAATGTctactttgtatatatatatattttagagtgagtgtgtgcgagtatatacaccgatcagccataacattatgaccacctgcctaatattgtgtaggtctcctgcttgccgccaaaacagccctgacccatcgatgcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaaaacgttagcagcagatcctttaagtcctgtaagttgcgaggggggcctccatggatcagacttgtttggccaAGTtgtttggaggccaagtcagcaccttgaactcgtgattaatcagaccaggccaccttcttccattgctccgtgg

Function

NR:

description
PREDICTED: deoxycytidine kinase-like

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004137 deoxycytidine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011539 True 2105 mRNA 0.43 7 30173691 30181506

Neighbor

gene id symbol gene type direction distance location
AMCG00011540 LOC103365697,LOC102790792,LOC102213970 coding downstream 92553 30072618 ~ 30081138 (-)
AMCG00011541 LOC103365697 coding downstream 115459 30054832 ~ 30058232 (-)
AMCG00011537 NA coding downstream 141799 29987059 ~ 30031892 (-)
AMCG00011535 eif4ebp3l,eif4ebp3,LOC107587081,LOC107576657 coding downstream 191020 29967475 ~ 29982671 (-)
AMCG00011534 NA coding downstream 434322 29686185 ~ 29739369 (-)
AMCG00011544 NA coding upstream 74205 30255711 ~ 30256184 (-)
AMCG00011546 NA coding upstream 275920 30457426 ~ 30461952 (-)
AMCG00011549 pura,LOC106563647,LOC105894349,LOC106603021,LOC107684715,LOC107693725 coding upstream 352382 30533888 ~ 30534748 (-)
AMCG00011554 LOC108442605,LOC107660786 coding upstream 1148233 31329739 ~ 31343995 (-)
AMCG00011553 psd2,LOC107718491,LOC107559287,LOC108269349,LOC107589099 coding upstream 1203257 31384763 ~ 31388439 (-)
G107886 NA non-coding downstream 5445 30168019 ~ 30168246 (-)
G107810 NA non-coding downstream 231201 29942238 ~ 29942490 (-)
G107786 NA non-coding downstream 298428 29831921 ~ 29875263 (-)
G107770 NA non-coding downstream 373075 29796655 ~ 29800616 (-)
G107765 NA non-coding downstream 386336 29787034 ~ 29787355 (-)
G107899 NA non-coding upstream 111756 30293262 ~ 30357585 (-)
G107910 NA non-coding upstream 223943 30405449 ~ 30448589 (-)
G107949 NA non-coding upstream 373181 30554687 ~ 30554895 (-)
G107965 NA non-coding upstream 521924 30703430 ~ 30703632 (-)
G107975 NA non-coding upstream 882663 31064169 ~ 31073667 (-)
AMCG00011536 NA other downstream 253671 29886216 ~ 29920020 (-)
G107713 NA other downstream 548304 29625084 ~ 29625387 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 3657184 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 4154291 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 5155359 25012205 ~ 25018332 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 10067 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 1948988 32130494 ~ 32205554 (-)

Expression


Co-expression Network