AMCG00011540 (LOC103365697,LOC102790792,LOC102213970)


Basic Information

Item Value
gene id AMCG00011540
gene name LOC103365697,LOC102790792,LOC102213970
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 30072618 ~ 30081138 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011540
ATTGGTAAATTGTCGACTGCCGATGGTAAAGCCTTCGCAGATCCCGAGGTGCTGCGCCGACTGACATCCTCTGTGAGCTGTGCACTGGACGAGGCCGCGGCCGCCCTCACCCGCATGAGAGCAGAGAACACGCTCAACGCTGGCCAGGCAGACAACCGTAGCTTGGCGGAAGCCTGTTCAGACGGGGATGTCAATGCAGTCCGTAAACTCTTAGATGAAGGAAGAAGCGTGAACGAGCACACCGAGGAGGGCGAGAGCCTGCTTTGCCTAGCCTGCTCGGCCGGCTACTATGAACTTGCACAGGTCCTGCTTGCGATGCATGCAAATGTTGAGGATCGAGGGATCAAGGGGGACATCACGCCTCTAATGGCAGCAGCTAGTGGAGGATACGTGGACATAGTCAAACTGCTGCTAGTGCATGGCGCTGACGTCAATGCCCAGTCCTCAACAGGCAATACAGCCTTGACATATGCCTGTGCCGGGGGCTTTGTGGATGTGGTGAAAGTGCTGCTGAAGGAGGGGGCGAACATCGAAGACCACAACGAGAACGGACACACTCCCCTGATGGAGGCGGCCAGTGCTGGACACGTGGAGGTAGCCCGGGTGCTCCTGGAGTATGGGGCAGGAATCAACACTCACTCCAACGAGTTCAAAGAAAGTGCACTTACACTGGCGTGCTACAAAGGTTGGTACCCTGTAGCTGCTCTCTTTCATAGAAAAGAAGCAAACTATCCTGCACAGCACCTGCAAGGGTTTGCACAC

Function

NR:

description
PREDICTED: ankyrin repeat and KH domain-containing protein 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011540 True 762 mRNA 0.56 4 30072618 30081138

Neighbor

gene id symbol gene type direction distance location
AMCG00011541 LOC103365697 coding downstream 14386 30054832 ~ 30058232 (-)
AMCG00011537 NA coding downstream 40726 29987059 ~ 30031892 (-)
AMCG00011535 eif4ebp3l,eif4ebp3,LOC107587081,LOC107576657 coding downstream 89947 29967475 ~ 29982671 (-)
AMCG00011534 NA coding downstream 333249 29686185 ~ 29739369 (-)
AMCG00011532 grk6,LOC107561710 coding downstream 558610 29491908 ~ 29514008 (-)
AMCG00011539 LOC105907442,LOC105011305,LOC106603918,LOC108439787,LOC107700028,LOC107756157 coding upstream 92553 30173691 ~ 30181506 (-)
AMCG00011544 NA coding upstream 174573 30255711 ~ 30256184 (-)
AMCG00011546 NA coding upstream 376288 30457426 ~ 30461952 (-)
AMCG00011549 pura,LOC106563647,LOC105894349,LOC106603021,LOC107684715,LOC107693725 coding upstream 452750 30533888 ~ 30534748 (-)
AMCG00011554 LOC108442605,LOC107660786 coding upstream 1248601 31329739 ~ 31343995 (-)
G107810 NA non-coding downstream 130128 29942238 ~ 29942490 (-)
G107786 NA non-coding downstream 197355 29831921 ~ 29875263 (-)
G107770 NA non-coding downstream 272002 29796655 ~ 29800616 (-)
G107765 NA non-coding downstream 285263 29787034 ~ 29787355 (-)
G107732 NA non-coding downstream 391592 29680810 ~ 29681026 (-)
G107886 NA non-coding upstream 86881 30168019 ~ 30168246 (-)
G107899 NA non-coding upstream 212124 30293262 ~ 30357585 (-)
G107910 NA non-coding upstream 324311 30405449 ~ 30448589 (-)
G107949 NA non-coding upstream 473549 30554687 ~ 30554895 (-)
G107965 NA non-coding upstream 622292 30703430 ~ 30703632 (-)
AMCG00011536 NA other downstream 152598 29886216 ~ 29920020 (-)
G107713 NA other downstream 447231 29625084 ~ 29625387 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other downstream 3556111 26506943 ~ 26516507 (-)
AMCG00011465 NA other downstream 4053218 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 5054286 25012205 ~ 25018332 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 110435 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 2049356 32130494 ~ 32205554 (-)

Expression


Co-expression Network