AMCG00011545


Basic Information

Item Value
gene id AMCG00011545
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 30237315 ~ 30243219 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011545
AGTGACTAACATCAGCAGTATAAATACTGTGACAGGAACACAGACCGACAGTCATTCTCTTGTCAAGTTATCGGGAAGTTTGCTTTGCATTGCTGCGTGTGAGAAGACTATTTTAACGTAAACTTATCAATTTGACTGAGCTGCttgtgaacaacaacaacaacaacacacgttttggattaatattttgttttgtttttaaattgaaattatgAAGGCTTTTGTAGCGGCACTGTTCTTTGTACATGTTCTGTCCAGCTTGGTAAATGGGGCAGccattgaaatgtatgaaagcGAGAAACCTGTACAAACTGAAGGATTCGAGCTCACTGACTCTCTGCGGGACAACAATAACCAAGACGAATATTACCCTGACGAGTATGATGATACTGACTATGATGAATACTCGTCAGGAGACGACGAAATTATATTTCCAAGAgTTGCGTTTTCCACCAAACCGAAAGAGTCACCCCCTGTGACTTTGATTCAAGAGCATGGCAAAAAGAGGAAAGGAAAGGGCAAAAGAAAAGGCCAGGGAAGAAAGAGGAACCCCTGCTTGAAGAAATTCAAGGACTTGTGTATCCATGGTGTCTGCCAGTACATCAAGGACCTGAGAATGCCCTCCTGCATATGTCAGACTGGCTACACAGGAGAGCGGTGTCACTTATTCAGCTTGCCTGTGGTGAAGGAGGGGGAACGCTATGACAGGACAACAGCCCTGGCTGTAGTGGCTGTCATACTGTCTTCTGTGTGTCTGCTCATCATTGGAATACTGCTGGCACTCAGGTATCACAAAAGTGGGGCATACAATGTGGAAAATGAAGAGAAGGTGAAACTGGGGATTGCCACAAACCACTAAATTTCAAGTGACAATGGTAAGTACCATGTGTGATTATAATGTGTACACTGTGCAAATATAATGTGTTGCCTTTCCAGTTGAAGAAAGTGGTCATTTCTGATTTCTGAAGGATGTTTCACAATCGAAAAGTGTGCTTCCCAATCCCAGTCCTGGAGTCCCACtgtctcttctgtttttctttttaactgagCACTCCTTAGCTGTAGAATGTCCATCTCTTTAACAGACTACAATCATTTATAGGCTTGATTTAAGCCATTTGATTTGAATGATCTGTTTGAATTAAACGAACTGATACTCCAGGACCAATGATGAGaaccattgtttattttgtctttagtATAGTGCTCGCACACAAAGATTAGATACAAAGATCAAAAAACAGTGATAAAGGATCTAAAGTGTCTTCAAATAACATTTGATTTCTCTCACGAAAGACAAATACCATGGatgattttacagtaaaacagtGCTTTATATTCTAAGATACAATAATACTGTGAGATAATGACTTGAATTGAagcatgtatatgtatttaaggCAAAATCATTGGGGTAAATGTAACCCTCAATGCCCGTGGTTAGGAAAAGGCCTGTTTTGTCTGGTAATATGTCTGTAACTGTGGCTGTGTTTTTCAGGAAGGTCTATTTGAAGCTCTACCTCAACAAGATTGAAAAAAGACAAGAAGTAGAATGAGATGGAAGTAGAGGCCCAAAGAAGGAGGAATAATTCAGAGGAAGTTCAGTGGGACATGCAGAGGGAACTGGAGCACAGAAAGGCAGGAGAATTGGGCTCAGTGAAGGCCAAGACACAGCAGACAGGACATCATAAGACAGATGTTCATACAAGACAGATATGCTTTTGAAGGCTGAGGAACCGCCAAAAAAggacataataattaaaaaatatatattttttgtggacTCTGATTCTTGTTACCCATCTTGTCAACAGTTTGTGGACTGTTAAAGAGttcaaactgagaaaaaaaggaaaaaatacatgcatcCTTTGGGTgcttttttccaaaatgtggTTCTATCTGTACATTATAGAAAAGGActgcatttgtgtatttttttgtttgtttttatggtcttgttttctaatgtaatgtataaatactatttatatacagtgtaaggcttttaatttatttatttaagttaaaaaacaaaggatttttttttttataaaatatatttattctctttaaaaaaaatgcactgcCTGTTCCCAATGTCCTGTATCATctcatatgtttttgttttgttacgtatttatttttctaacaacCAAGTTGTCCTTTTTTTCCAATGTGCtaagtgaaaaatatttgtatgcatatttattaagaaaaataaaaagtgtttgctaatgaggaaaacaaaaagtgctTTAAGTACCACATTGAAGGAATGCTACAAAACTGATCATAAAAGTGTGTTCAATATTCTActgataattatgttttaagtttaattttctattaaacTTCTATTAAATGTCTAATTTCACTACCATTACTTTAACTGCCTTTTGGTATGAGAAATGTgataaaccataaaaaaaacataggttCTTAGGAAGAAATCCTACTTCTTTTGATTTTAGATGTAAAGTaagcaacaagaaaacaaacaacttatAATTCATTTGCaagtgtacatgtatataagtgtgtgtatatattatatatcccTTCCAATACATTAATACGCTATGCTAGGTGAATCAAATCACAATGTTACACATTTACAGAGgtcattaaatgtgaaataatcgTTTTAGCATTTTCTCAAAGACATTTTAGGAATAAAATGACAGTGGAAATAAGTTTTTGTATGAGTAGCATTACAGCACTGTTCATaactaaatgtttaataaaaaat

Function

GO:

id name namespace
GO:0070654 sensory epithelium regeneration biological_process
GO:0060041 retina development in camera-type eye biological_process

KEGG:

id description
K08523 HBEGF; heparin-binding EGF-like growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011545 True 2752 mRNA 0.35 5 30237315 30243219

Neighbor

gene id symbol gene type direction distance location
AMCG00011542 LOC105026271 coding upstream 42429 30182402 ~ 30194886 (+)
AMCG00011538 LOC108439763,LOC104968126,LOC108278891 coding upstream 179815 30003200 ~ 30057500 (+)
AMCG00011533 NA coding upstream 586303 29644168 ~ 29651012 (+)
AMCG00011530 NA coding upstream 800597 29417923 ~ 29436718 (+)
AMCG00011529 dbn1,LOC107732329,LOC107692779,LOC107561701 coding upstream 820052 29371879 ~ 29417263 (+)
AMCG00011548 NA coding downstream 16319 30259538 ~ 30261357 (+)
AMCG00011547 NA coding downstream 189755 30432974 ~ 30444408 (+)
AMCG00011550 nrg2,LOC102784840,LOC100711745,LOC102211978 coding downstream 393163 30636382 ~ 30637300 (+)
AMCG00011552 NA coding downstream 953647 31196866 ~ 31203698 (+)
AMCG00011555 NA coding downstream 1358288 31601507 ~ 31602428 (+)
G107857 NA non-coding upstream 66935 30170001 ~ 30170380 (+)
G107817 NA non-coding upstream 243046 29986595 ~ 29994269 (+)
G107781 NA non-coding upstream 404433 29831459 ~ 29832882 (+)
G107774 NA non-coding upstream 429958 29807090 ~ 29807357 (+)
G107767 LOC100846954 non-coding upstream 442102 29794545 ~ 29795213 (+)
G107909 NA non-coding downstream 162191 30405410 ~ 30448646 (+)
G107932 LOC101154678 non-coding downstream 231094 30474313 ~ 30493033 (+)
G107937 NA non-coding downstream 250138 30493357 ~ 30493741 (+)
G107962 NA non-coding downstream 433406 30676625 ~ 30676996 (+)
G107971 NA non-coding downstream 659398 30902617 ~ 30902827 (+)
G107858 NA other upstream 25225 30171788 ~ 30212090 (+)
G107784 NA other upstream 361839 29857970 ~ 29875476 (+)
G107741 NA other upstream 537896 29697601 ~ 29699419 (+)
AMCG00011519 NA other upstream 1360960 28869142 ~ 28876355 (+)
G107394 NA other upstream 2509448 27712206 ~ 27727867 (+)
AMCG00011551 NA other downstream 740760 30983979 ~ 31173789 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 1859654 32102873 ~ 32204915 (+)

Expression


Co-expression Network