AMCG00011551


Basic Information

Item Value
gene id AMCG00011551
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 30983979 ~ 31173789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011551
ATGGGGCTTCATCGATCCCCACTAGTGGCCCCCTCGGCCACACCCACGACAACTACTGCCCCAAAGTTGAAAAAACTGAGGAACCAATCAGTTCGGGAAGGAGAGAAGCTCACTCTCAAATGCGAGGCTACAGGGAATCCCAATCCTACCTATAAGTGGTACAGAGATGGCAGCGAACTCAAAAAGagcaaagaaattaaaataaagtctgGCAAGTAa
>TU135008
CACAGAGTACTCTGCACTGGTAGCTAAATACTGCTTACAGCTCCTTGGGATTATCTATTTTGGGGATTatacagcaacagaaaacagcacaatGTCTGAGGGGAGAAGgaaggggaaaggaaaaaaggggaacagaaaagaaaagaaaggtaaaACGGATCTAAATGGAGAAGCTACTGCCCCAAAGTTGAAAAAACTGAGGAACCAATCAGTTCGGGAAGGAGAGAAGCTCACTCTCAAATGCGAGGCTACAGGGAATCCCAATCCTACCTATAAGTGGTACAGAGATGGCAGCGAACTCAAAAAGagcaaagaaattaaaataaagtctgGCAAgaaaAACTCCAGAATACAGATCAGCAAGGTGAAGGTTGAAGACTCTGGGAATTATACATGTGTGGTGGAGAATATTTTAGGGCAGGAAACTGCAACAAGCACCATCAACGTCCAAAGCAtaacaacaacacTTTCTCCTGGCTCAGGACATGCCAGAAGATGCAATGAGACCGAAAAGGCTTACTGTGTAAACGGCGGCGTTTGTTACTACATAGACGGTATAAATCAACTGTCTTGCAAATGTCCCACTGGATTCTCCGGGCCAAGGTGCTTGCAGACAGAGCCATTGCGGTTATACATGCCCAATCCTACTGAAAAAGCAGAGGAGCTTTACCAGAAGAGGGTTCTGACAATCACAGGGATATGTGTTGCATTGCTCATCGTGggaattgtgtgtgtggtagCTTACTGCAAAACCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011551 False 219 mRNA 0.48 2 31025176 31033734
TU135008 True 757 TUCP 0.44 6 30983979 31173789

Neighbor

gene id symbol gene type direction distance location
AMCG00011550 nrg2,LOC102784840,LOC100711745,LOC102211978 coding upstream 346679 30636382 ~ 30637300 (+)
AMCG00011547 NA coding upstream 539571 30432974 ~ 30444408 (+)
AMCG00011548 NA coding upstream 722622 30259538 ~ 30261357 (+)
AMCG00011545 NA coding upstream 740760 30237315 ~ 30243219 (+)
AMCG00011542 LOC105026271 coding upstream 789093 30182402 ~ 30194886 (+)
AMCG00011552 NA coding downstream 23077 31196866 ~ 31203698 (+)
AMCG00011555 NA coding downstream 427718 31601507 ~ 31602428 (+)
AMCG00011556 NA coding downstream 496356 31670145 ~ 31709275 (+)
AMCG00011562 LOC102778048,LOC104948140 coding downstream 1135777 32309566 ~ 32423292 (+)
AMCG00011564 LOC106563625,LOC105010896,LOC107589094,LOC101168142 coding downstream 1259051 32432840 ~ 32436433 (+)
G107971 NA non-coding upstream 81152 30902617 ~ 30902827 (+)
G107962 NA non-coding upstream 306983 30676625 ~ 30676996 (+)
G107937 NA non-coding upstream 490238 30493357 ~ 30493741 (+)
G107932 LOC101154678 non-coding upstream 490946 30474313 ~ 30493033 (+)
G107909 NA non-coding upstream 535333 30405410 ~ 30448646 (+)
G107987 NA non-coding downstream 45526 31219315 ~ 31219537 (+)
G108023 NA non-coding downstream 371525 31545314 ~ 31545605 (+)
G108025 NA non-coding downstream 388376 31562165 ~ 31562457 (+)
G108032 LOC107575789,LOC100846954 non-coding downstream 401804 31575593 ~ 31575893 (+)
G108035 NA non-coding downstream 424841 31598630 ~ 31598902 (+)
G107858 NA other upstream 771889 30171788 ~ 30212090 (+)
G107784 NA other upstream 1108503 29857970 ~ 29875476 (+)
G107741 NA other upstream 1284560 29697601 ~ 29699419 (+)
AMCG00011519 NA other upstream 2107624 28869142 ~ 28876355 (+)
G107394 NA other upstream 3256112 27712206 ~ 27727867 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 929084 32102873 ~ 32204915 (+)

Expression


Co-expression Network