AMCG00011552


Basic Information

Item Value
gene id AMCG00011552
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 31196866 ~ 31203698 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011552
CCTCTTGCTTTCCTGTGCAGACATGAAGATCGCACGTGGAGCTTGGACAGGACGGAGAGTGTTATTTCAGACTCACATTCGGGCATGATGTCATCCTCAGTGGGGACCAGTAAATGCAACAGTCCTGCCTGCATTGAAGCTCGGGCACGACGTGCAGCACACTGTGGCATTACTGACCCCCGTCGCCCAATGATGCAGTACAGAGACTCCATCGACTCACTGCGGGACTCGCCACACAGTGACAGGTACGTGTCAGCCTTGACGACACCAGCCCGCCTCTCGCCCGTGGACTTCCATTATTCTCTGCCTACACAGGTGCCTACTTTTGAGATCACATCACCCAACTCCAACCATGCTGTCTCATTGCCACCTGTCGCACCCATTACGTACCATGTGGAGGAGGACCAGCCACTCCTTCGAAGGTACCAAGTGCCCCTGCAGGATGTCCAGCGGCACGATGCTTACCGGCAGCAGAGGCGTAGCTACCTGAATGACAGTACAGGCAGCCTGCCCTCCAGCCCTTTCAGGCTGGTGGAAGATGATGAATATGAGACTACACAGGAGTACCTGTCTGCTCTTGAGCAACCAAAGAAAACTGTCACTAACAGCAAGCGGTGGAAAAAATCCAAACTCAATGGGCACATTTCACACCGTGGTGAGGCGATGAGGGACTACAGTTCACGGAGCTGCATGTCCGACAGTGATTCAGAGGAGGAGCAGGCGGGCGAAAGCACTCCTTTTTTGAGTATGCAGAACATGAACATGATGGCAAACACAGAACCGTCAACTATATACAGACCGGCTGACAGCAGGACTTATTACTCATCAGGCCAACACAGTGGGCGTGGGAATTTACAAACCAGACTAACACACTCAAGGTCGAAACAAGACAATGCACCCCTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011552 True 906 mRNA 0.53 2 31196866 31203698

Neighbor

gene id symbol gene type direction distance location
AMCG00011550 nrg2,LOC102784840,LOC100711745,LOC102211978 coding upstream 559566 30636382 ~ 30637300 (+)
AMCG00011547 NA coding upstream 752458 30432974 ~ 30444408 (+)
AMCG00011548 NA coding upstream 935509 30259538 ~ 30261357 (+)
AMCG00011545 NA coding upstream 953647 30237315 ~ 30243219 (+)
AMCG00011542 LOC105026271 coding upstream 1001980 30182402 ~ 30194886 (+)
AMCG00011555 NA coding downstream 397809 31601507 ~ 31602428 (+)
AMCG00011556 NA coding downstream 466447 31670145 ~ 31709275 (+)
AMCG00011562 LOC102778048,LOC104948140 coding downstream 1105868 32309566 ~ 32423292 (+)
AMCG00011564 LOC106563625,LOC105010896,LOC107589094,LOC101168142 coding downstream 1229142 32432840 ~ 32436433 (+)
AMCG00011565 LOC104948140,LOC103368254,LOC104924602 coding downstream 1245806 32449504 ~ 32451892 (+)
G107971 NA non-coding upstream 294039 30902617 ~ 30902827 (+)
G107962 NA non-coding upstream 519870 30676625 ~ 30676996 (+)
G107937 NA non-coding upstream 703125 30493357 ~ 30493741 (+)
G107932 LOC101154678 non-coding upstream 703833 30474313 ~ 30493033 (+)
G107909 NA non-coding upstream 748220 30405410 ~ 30448646 (+)
G107987 NA non-coding downstream 15617 31219315 ~ 31219537 (+)
G108023 NA non-coding downstream 341616 31545314 ~ 31545605 (+)
G108025 NA non-coding downstream 358467 31562165 ~ 31562457 (+)
G108032 LOC107575789,LOC100846954 non-coding downstream 371895 31575593 ~ 31575893 (+)
G108035 NA non-coding downstream 394932 31598630 ~ 31598902 (+)
AMCG00011551 NA other upstream 23077 30983979 ~ 31173789 (+)
G107858 NA other upstream 984776 30171788 ~ 30212090 (+)
G107784 NA other upstream 1321390 29857970 ~ 29875476 (+)
G107741 NA other upstream 1497447 29697601 ~ 29699419 (+)
AMCG00011519 NA other upstream 2320511 28869142 ~ 28876355 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other downstream 899175 32102873 ~ 32204915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_02531899_02588907 NRG2A coding CI01000006 null 2531816 ~ 2589763 (+)