AMCG00011565 (LOC104948140,LOC103368254,LOC104924602)


Basic Information

Item Value
gene id AMCG00011565
gene name LOC104948140,LOC103368254,LOC104924602
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 32449504 ~ 32451892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011565
GTAAAATCAAGTATTCCGAGCAGGTGTACGACTCGTGTATGGATGCTTTTGATTGCCTTCCCCTTGCTGCATTAATGAACCAGCAGTTCTTGTGTGTTCATGGAGGCCTGTCACCAGAAATACACACTTTAGACGATATAAAAAAGTTGGATAGGTTTAAAGAGCCACCAGCATTTGGGCCAATGTGTGACCTCTTATGGTCAGACCCTTTGGAAGACTTcggaaatgaaaaaacacaggaaTATTTCAGCCACAATACCGTCAGAGGTTGTTCTTATTTCTAT

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011565 True 284 mRNA 0.42 2 32449504 32451892

Neighbor

gene id symbol gene type direction distance location
AMCG00011564 LOC106563625,LOC105010896,LOC107589094,LOC101168142 coding upstream 13071 32432840 ~ 32436433 (+)
AMCG00011562 LOC102778048,LOC104948140 coding upstream 26212 32309566 ~ 32423292 (+)
AMCG00011556 NA coding upstream 740229 31670145 ~ 31709275 (+)
AMCG00011555 NA coding upstream 847076 31601507 ~ 31602428 (+)
AMCG00011552 NA coding upstream 1245806 31196866 ~ 31203698 (+)
AMCG00011563 NA coding downstream 136305 32588197 ~ 32601514 (+)
G108067 NA non-coding upstream 655118 31794138 ~ 31794386 (+)
G108056 NA non-coding upstream 775401 31646597 ~ 31674103 (+)
G108035 NA non-coding upstream 850602 31598630 ~ 31598902 (+)
G108032 LOC107575789,LOC100846954 non-coding upstream 873611 31575593 ~ 31575893 (+)
G108025 NA non-coding upstream 887047 31562165 ~ 31562457 (+)
AMCG00011559 UBE2D2,ube2d1,LOC105015883,LOC105029919,LOC107680290 other upstream 244589 32102873 ~ 32204915 (+)
AMCG00011551 NA other upstream 1275715 30983979 ~ 31173789 (+)
G107858 NA other upstream 2237414 30171788 ~ 30212090 (+)
G107784 NA other upstream 2574028 29857970 ~ 29875476 (+)
G107741 NA other upstream 2750085 29697601 ~ 29699419 (+)

Expression


Co-expression Network