G102434


Basic Information

Item Value
gene id G102434
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 975553 ~ 978127 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU127921
TGTCACCTGTAGAGCTTCACCAGAGACCAAGAGGGACTTACGCATGTTCGTCCCCATGTCCCACCAGCCCGAGGAGTCGGCTCTCTGTGCCGCTGTCCACAACAAGACAACACTGGACGGcTATGATGCACTGCTCCTCCTCTGCCAGGGTCTCCTGGATCGCCACCGACTGGTCCATTTTCACAGGAAGGTCTCTAAGCACGACAGTGTGGAGAGAAAACGGGCTGCGCTTCCCAAATGACGCCTGAAATCCCCGCCGTGGCGCCGATAACTTCAGTGGGTCATGAAGTTTCGCGTTACTGGGCGATGTATTCTGCAGTCCAGATGTTGCACAGCTGCACGCACGGACTGCGCTGCTCTGACGTCACGGCGCCGCAGTGGGGAACCCCTGACAGAGCAGCGGCTGCGCAGCGGCGGTCAGGCGGGGTGTCTCTGCGCATCCGCTTTCACAGGTCAAACGGAGAGAGCAGGGACAACAGCCTGAGGTCTGACGAGAGAAAGAAAGTCGAAGAAACGTGCCCCCCATCCGCTCCGCTGCTCCTGGACCGTCACAACAGCGCTGCCATCGGCCAGAAACAGCTGTGAAAcatatcttttttatttcagtgtctCAGACTCCTTCGTGCATGTAATAGTTGTTACATATACGTTATAAATCATACACTGTAACACTACTGCTCCTACTATAACAACAATACACAGTTTCTCAGAGCAGATGCCATGACGTCTGTCCTTTTTGCTGTGTAGTGGCCTTACTGTGCTGAACACGCAACACTGGCCACTGAAGTCCCTCCAACGTCCCGTGTGTGTCTACAGGTGATGAAGAGTGTGGATGTGGTTGAGGATTCTCGTCACTGcctcatcatcttcatcatcatgattatgttgttgtttgtcattttcatcACCAGCAGCAATCATAATACATTGACAGTTACCAGATTACTACAGTTCATACCCAAAACATAAAGTGCACACCTACATTCTTTCCTTACTTTTCTGATTTGCAATAATTTGGATTTATTGTACAGATTCAATTGAACATGTTATTCTGAAAATGTAGTCGGTGAAAGTCCACTCGGGGCTCCCGAGCAGCCGGGCTTCATCACTGGGACATGAGCTGGACTTCCTGCTGGGGAATAACGACAAGTCTCCTGTGGCTAGGATGGCCCTGGACAGAGCTCAGGCCTGTATCGAGACACAGACAGCGCGAGTGATGTCCAGTCCGCGCTCTATGATTCGGCAGCTGTGCTACTTTAATAATGATTACAAAGAGCAGGTTTGTGCTGcgagaggaagaggagacaACACTGCCGAGCTGCTGCAGACTGGACCCGTCTCAGCACGTGTTGCATTGTGTCAACACGGTCAGGTTGACTCATTCGACATGGAGGAGACGTctattcagatttatttttctgttaaagATTGTTATCATTTCCGTTTTGAAGTAActgacagattttaaaatgttatttctgaacatgcttcttgcattcCATTTGAAACCTCTATTCCACTGAAGTCGAGTCACAGTTTGTAGAGTTTGTTCAATCGACAGAAGCGACAAACATCACTTTTGAATTGTTTATTATGGAATAATCTTTTTGCAAGTAACATTACAggacattaaaacaacatacaattatattgcaaaaataaaagtacttttCACCTGCAGAAGGCAtaagtcatgtttttattgctaTAATTTGTAtgatatagtacacacacacaaacatgatcTAGAATCATTCCTGTCTTGGTGTATTCCAGGGTTGGAGAACAGTGGTAGGGTTTCAATATAAATGCACATTCGTACGACTCTGTTGCTGTTTTAAAGATGATGTACAGATGTGAACCTGATTGACTGA

Function

GO:

id name namespace
GO:0016458 gene silencing biological_process
GO:0031047 gene silencing by RNA biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127921 True 1874 TUCP 0.47 2 975553 978127

Neighbor

gene id symbol gene type direction distance location
AMCG00010802 NA coding downstream 32087 935183 ~ 943466 (-)
AMCG00010799 grik3,LOC106605119,LOC106583195 coding downstream 345660 587856 ~ 629893 (-)
AMCG00010798 grik3 coding downstream 398379 565231 ~ 577174 (-)
AMCG00010797 NA coding downstream 782478 157490 ~ 193075 (-)
AMCG00010791 NA coding downstream 818756 151074 ~ 156797 (-)
AMCG00010807 maneal,LOC105903681,LOC106583256,LOC102777073 coding upstream 63874 1042001 ~ 1056921 (-)
AMCG00010813 NA coding upstream 154643 1132770 ~ 1136837 (-)
AMCG00010819 NA coding upstream 187973 1166100 ~ 1209262 (-)
AMCG00010818 taf12,LOC107705731,LOC107588503,LOC107566933,LOC107755488,LOC107700725 coding upstream 236278 1214405 ~ 1219326 (-)
AMCG00010817 NA coding upstream 243960 1222087 ~ 1242650 (-)
G102433 NA non-coding downstream 912 974435 ~ 974641 (-)
G102432 NA non-coding downstream 9337 965962 ~ 966216 (-)
G102372 NA non-coding downstream 414756 560434 ~ 560797 (-)
G102367 NA non-coding downstream 488022 487273 ~ 487531 (-)
G102362 NA non-coding downstream 687582 287749 ~ 287971 (-)
G102443 NA non-coding upstream 26990 1005117 ~ 1008128 (-)
G102466 NA non-coding upstream 171307 1149434 ~ 1151389 (-)
G102470 LOC108245179,LOC103363630 non-coding upstream 178429 1156556 ~ 1161075 (-)
G102498 NA non-coding upstream 276593 1254720 ~ 1257986 (-)
G102507 NA non-coding upstream 438134 1416261 ~ 1459547 (-)
AMCG00010794 NA other downstream 825724 136369 ~ 149829 (-)
AMCG00010806 NA other upstream 55703 1033830 ~ 1034874 (-)
AMCG00010843 NA other upstream 1503747 2481874 ~ 2496446 (-)
G102762 NA other upstream 1761689 2739816 ~ 2778023 (-)
G102774 NA other upstream 1780351 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 2201843 3179970 ~ 3182619 (-)

Expression


Co-expression Network