G102498


Basic Information

Item Value
gene id G102498
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1254720 ~ 1257986 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128003
TCTCGTTTCTATGTGGTTTTAATTGAGCTTTACAAACAACAGTCTTTGTGATGTTGGCAGTGAGGCCCGGGAACTCACTAGATCAGTGGTCCTCAAACccgtcctggaggagcccctgccctgctggtttttgttccaaccagctctcaatgacttaattgaactaataatttcctaaatcagaggcttttaattattttaacagcaggggttttaagttaagtataaaattgtatgaGGAAAATATTAAGGAGACAACTTTTGATCAGTTTCACAATtcaaatttaatcaaattacttaaattaagggttcaattaagtaattgagagctcggttggaacaaaaaccagcaggcaggtggtactccaggacggGTTTGAGAACCGCTGCACTAGATTGAGTACAAAGAAACAGCACAATCCCTCACAAACCCCCTGACCAGAGTGAGCAAACGCCAGCTACGTAAACTGGGGAGAATTTGCTATAGGTTAAACATATCCTGCGCAGCTGCTTAATGGATGGCACAGGGAGTACAGTAGGAGGACAAGCAAAGAGGCTACTTTGGGTCAGTACATATTGAATGGAAGTGAAAGATGCTCACAGAGAAATCACTGGAGTGACAACTTGTTTTTATGCTATCAAAGGACTCAAAGGTAGTGGCTTATCTGGTAGATCACACGTGCGGTTCTAGTCTACTCTagaacacagcaacacaagAACATCTACAGATGCGCGAAGGGCATTTCAGGCACACCTTTGTTCATTTGGTTTCTAGTAGTGAAATCCATCCACTTCACAGGTCCATCCAGCCTCTGTTTGAGAGGAACCCAGAGAGCTGGTGCAACTGCAAGGCTGGGAGGATTGTTCCAAGACCCCTCATCCCCCTTTGAGTCAAGAAAGCACTTCACattgtgcatctctctctctcactcacacacacacacacacacacacacacacacacacacacacacacacacaatctgcagACTGAGCTTTAGTGCTCACTAACTCAATGCACAACCACCCCCCCCAGCAGCCATTCAACAGGAGGTTTGATTTGAAGGGACAGAGGGTCACACCAAGTCACAGACGAGGAGCAGAAGGTGCACATCTGTCCTCATGTTGTCCCTCTGTATGCCTGGGGTAAACACACTGTGTCACCAGGGCCAAGGCGGTAAAGGggcaaaataattaacaatataaaaacaacaacaaccttaaaacaactttgttaacgctgacaaaaacaaaagcacatcgGAAGGGAAGCACTTATTGACTCTTGAAGGAAAGCTTGTCCGACTCTTTTATGTACAGTACCCTGTATTTATCGCTTGACATTCACGCATTTTTCACAGGACACCTTATTAACAGCTGTGGACAGAATATACAGAAAAGCCCGTTACAAACTGGAATCTACACACGTCCAACACCAGCTTCTGTCCCGCTAAAACAAaggagaaaacaataaaaagtttGTAATAATCTACAGATAAGGCGCAGAGAAGTCAACGGCCATCTGAAAAGCGTTGGGTATTTACAACAAAGTGCGCGCCGGTGTCTCGTCAGACAGACTGCGCACAACACAGCGCTCCTGCCCCTCCACAGGTCTTTCCACCGTCAGAGGAGAAATGCACGATTCGAATCTACAGTCCTTCGGGGCCAGAACACACCTCCTGGTTCCTCCATCCACACGCAGCTCTCCCACCTGCAGAGCCCTGAAGGCCAGCACTGCCCACCGCAGGATCGCACAGGGAAAATGAAACCGAACGGACGTGTACCTGTGTGTGGGAGTGGCGCCCGTTCTGACCCCCTTCTGGGCGCTGTGCATTAATTATCTTGGCATCCTTGGCAacttttttagatttttttctatttttttaatataaaaaagtgaaaaataggACTATGAAAGCTTATATAGCAAATAAAAACCCCTAActaacaatattttacaaaataaccAGTTCACGTCCTGCTAATCAGAACGCGGCTTTGATTCGTTGCCTGTCTCCCTGTGACGAGGTGGACACCCATCGCCCTGAGGAAGCCACCAAAAACACGACAGCCTTGTGTGGTATCACAGCTTCCACTGATTCTGAagaataaatgtgtgtgagtgactaATGTGAAGTATgatggggaaaacaaaatgaatacatccaTATTTACTGCcaatatagcctatattttgagtagttttttttCGTTGACAAACCCATCACGGCCGACTGACAGAGGACGTGATTTCACATGCCTCCGCCCGCAGGGTTGGAAGAGAGCTGACAGGGCTTGAGAATGAAGACTTGATACCACTGGTACGTTCGTATTTTGGCGACTTCCCCCAGAACAGAGGGGATCCGGACCGATCCGCAGGGGGCGGGTCTGATCTACAGACCGGTAAGTTTGAAGTCCGCTGTCGTCCACACTATAGCCTGACAGGAACACACAAAACTGTGAACCGCAAATCCAAGGTGGGAAAAAATTAGTGAAAAGCAAATTTCTTACCAACCTGCtctgacaacaaacaaaccaggaaggagcaaaataaaaaataaaaagtcatgtAACGCTGTGATGTCATACTTggtcttttttctctttctttcttggttCAGGTTTTCCTTTAAAGAAATGCGAATCAGTCCAGTCCACGGAGGGGTAAAGCTGGCGATAATCGAACAGCCAAAACTGGTACAGCTTAATTCATGGCATCAGCCCCAGccccacacgcacacgcactccGCTGGTTTCATCCCTGTCAACACTCTGTCATGTGGGGACCAGTCCCTGCAGCCGAACACTTCTCCACCGCAGTGGATTTTGCACGAAGGATGTCTGACGTTTCCGAATCCGGCAGCGCAATCTATCAAAGGGGGGATGAGGACGCGGCGCAGCTCTGAGCCCAGACCCCCGCGGATGCATTAATCACCGGTCCATCCGCCTGTCCTGCCTGCGGACGCGGACGCCGGCCCGCCCTCACTTGGCCTCCTGCTCGTCCGCGTTCTCCTCCTCGATGACCACGATCTGCACGTCGTGGAGCTGCTCCTGGTGCTCGATCTGCAcgccctccacctcctccatCTCGCCTTGCACCACGCCACCCTCCTCCCCGGCGCCCTCGGCCAGCTGCAGGCCCATGACCGCGTGGTGGTGCCTGGCCTCGCTGCCGTGCTCTGGCGCCGGGTCGATCTCAATGACGGTCGTGTGCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128003 True 3216 lncRNA 0.48 2 1254720 1257986

Neighbor

gene id symbol gene type direction distance location
AMCG00010817 NA coding downstream 12070 1222087 ~ 1242650 (-)
AMCG00010818 taf12,LOC107705731,LOC107588503,LOC107566933,LOC107755488,LOC107700725 coding downstream 35394 1214405 ~ 1219326 (-)
AMCG00010819 NA coding downstream 45458 1166100 ~ 1209262 (-)
AMCG00010813 NA coding downstream 117883 1132770 ~ 1136837 (-)
AMCG00010807 maneal,LOC105903681,LOC106583256,LOC102777073 coding downstream 197799 1042001 ~ 1056921 (-)
AMCG00010828 NA coding upstream 534791 1792777 ~ 1796592 (-)
AMCG00010829 stmn1,LOC107587743,LOC104924882,LOC103040240,LOC107700727,LOC107597104 coding upstream 540233 1798219 ~ 1800760 (-)
AMCG00010827 pkib,LOC105417165,LOC107098269,LOC107374466 coding upstream 563665 1821651 ~ 1836885 (-)
AMCG00010836 NA coding upstream 885132 2143118 ~ 2180497 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding upstream 922518 2180504 ~ 2182472 (-)
G102470 LOC108245179,LOC103363630 non-coding downstream 93645 1156556 ~ 1161075 (-)
G102466 NA non-coding downstream 103331 1149434 ~ 1151389 (-)
G102443 NA non-coding downstream 246592 1005117 ~ 1008128 (-)
G102433 NA non-coding downstream 280079 974435 ~ 974641 (-)
G102432 NA non-coding downstream 288504 965962 ~ 966216 (-)
G102507 NA non-coding upstream 158275 1416261 ~ 1459547 (-)
G102519 NA non-coding upstream 260389 1518375 ~ 1518699 (-)
G102521 NA non-coding upstream 289830 1547816 ~ 1548095 (-)
G102525 NA non-coding upstream 410052 1668038 ~ 1668284 (-)
G102543 NA non-coding upstream 549643 1807629 ~ 1808088 (-)
AMCG00010806 NA other downstream 219846 1033830 ~ 1034874 (-)
G102434 NA other downstream 276593 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 1104891 136369 ~ 149829 (-)
AMCG00010843 NA other upstream 1223888 2481874 ~ 2496446 (-)
G102762 NA other upstream 1481830 2739816 ~ 2778023 (-)
G102774 NA other upstream 1500492 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 1921984 3179970 ~ 3182619 (-)
G102990 NA other upstream 2062827 3320813 ~ 3419176 (-)

Expression


Co-expression Network