G102562


Basic Information

Item Value
gene id G102562
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1857460 ~ 1912953 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128070
TGGCCCCACTGGGAGACTGGAAAACTGATCCAAAACGGCACACgagacacacacatgacacCAAGACACCCTTCAGAGTGCCTAAGTGGAACGCAAGAGTGACAGGGTGGCTGTGGGGGGCGCAGGTGCGTCTGCACACGTGTGGAGGAGACAGTGGGCGTGTCGCAGTGTCACGTGGAGCGAGAGTCGGCACGATCGGGGCGTTTTCAGTTTCACCCATCAAAGACACGCCAGTCGCTCGTCCGACGCCCATCACTGGAACTTTCACCGGTCAGGAATGTTTCGGACGCACTTCTGGTACAGAAGAGTCAACCGATTAAACCCAGAAGAACAAAGCAGCGAGATTATTACTTTACTGTAGTGTACGAATTTGCATTCATGcctgaaattaactgaaaatgagGAAAAAGAACCAAAAACAACTCGAGCACGGCAAGACAAATGCTCATGGGAGAAATAACAGTCATCGGGCCGCTTCCACAGACCGGATCGGCACCAGTCCTGGACTAAACCCGGTCAGTTCCGCAGTCCTGAACTCGTGCGGATCGACGTCTGCGGTTATTCTTTGGCACAGCTGAGCACCAGAGCCGAGTCGGTAATTGGTTTGAGCTGCTCCCTGCACTGATGATGGATGGGCTTCTTTAatcctttaaaaacatgttaacacttaaaaaacacTCAATTCTTAATGTATGCATCTTTAGGCAGATCGGCCCCGTATTTACAGCGCGTGGATTACAGGCACCGAGGCGCGTCTTTTAAATCacccaaaaacagaaaagaaaaggcactgCACACGAGTGAAGCGCAGCAGCGACTGCCACCTCGGAATAACTTGATTTCCatgagttttaaatgtattttgcgTGCAAGCCAGCGCCCCCCCAGTCCCCCCCAACGCCCGGCCCCGGCCCCTCAGTTGAACTCCCGGTTGGGCAGGACGAGAGGCGCCACCAGGGTCCAGAGGTAGAGCGCCAGGCCCAGCCAGCTGGAGCTGATCTTCACCCAGACCGCGGGCATGGTGCTGACCATGGCCTGGTAGGTGGTGTCCGgcctgaggaaga

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128070 True 1064 lncRNA 0.54 2 1857460 1912953

Neighbor

gene id symbol gene type direction distance location
AMCG00010827 pkib,LOC105417165,LOC107098269,LOC107374466 coding downstream 20575 1821651 ~ 1836885 (-)
AMCG00010829 stmn1,LOC107587743,LOC104924882,LOC103040240,LOC107700727,LOC107597104 coding downstream 56700 1798219 ~ 1800760 (-)
AMCG00010828 NA coding downstream 60868 1792777 ~ 1796592 (-)
AMCG00010817 NA coding downstream 614810 1222087 ~ 1242650 (-)
AMCG00010818 taf12,LOC107705731,LOC107588503,LOC107566933,LOC107755488,LOC107700725 coding downstream 638134 1214405 ~ 1219326 (-)
AMCG00010836 NA coding upstream 230165 2143118 ~ 2180497 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding upstream 267551 2180504 ~ 2182472 (-)
AMCG00010840 NA coding upstream 419263 2332216 ~ 2336743 (-)
AMCG00010839 NA coding upstream 452520 2365473 ~ 2382245 (-)
AMCG00010841 fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733 coding upstream 529274 2442227 ~ 2449554 (-)
G102543 NA non-coding downstream 49372 1807629 ~ 1808088 (-)
G102525 NA non-coding downstream 189176 1668038 ~ 1668284 (-)
G102521 NA non-coding downstream 309365 1547816 ~ 1548095 (-)
G102519 NA non-coding downstream 338761 1518375 ~ 1518699 (-)
G102507 NA non-coding downstream 397913 1416261 ~ 1459547 (-)
G102572 NA non-coding upstream 49329 1962282 ~ 1963953 (-)
G102609 NA non-coding upstream 258577 2171530 ~ 2171801 (-)
G102615 NA non-coding upstream 264323 2177276 ~ 2177516 (-)
G102623 NA non-coding upstream 339166 2252119 ~ 2252467 (-)
G102629 NA non-coding upstream 403812 2316765 ~ 2317264 (-)
AMCG00010806 NA other downstream 822586 1033830 ~ 1034874 (-)
G102434 NA other downstream 879333 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 1707631 136369 ~ 149829 (-)
AMCG00010843 NA other upstream 568921 2481874 ~ 2496446 (-)
G102762 NA other upstream 826863 2739816 ~ 2778023 (-)
G102774 NA other upstream 845525 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 1267017 3179970 ~ 3182619 (-)
G102990 NA other upstream 1407860 3320813 ~ 3419176 (-)

Expression


Co-expression Network