G102655


Basic Information

Item Value
gene id G102655
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2449200 ~ 2449881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128193
GTCACTGCCCACTCAGGAGCCGACAGCCTGGCAGCGGGCGCAGACATGCGGGGCAGTTATGTTCATGCAGGAGCTATAGGCTCGTGTCTGCCTATAGTGGGATAGGAAACCGAAGCCAGCAGTCAATGGCACTACACTACCGGGGGGTATTGAATGGTGGGTAAGATGTTCTTAGTTTCCCAACTGACGCCGGACTCACCTGCACGATCTGCCGGGGCAGCACGGACAGCGTGGGGAAGTTGCCCCGTCCGTGGATGGGCACAGTCTCGCCGAGGATGGAGTCCAAGCGCTGCACCTGCTCCCAGGACAGCACGCTGAAGCGCCGACTCTGCTCCGCCGCATCGCCGGAGGACATGGCGACCAAAGCCCGACACACAGCCGCCACAGAGCCTgtcttcagcagcagcagcagcgggggagagagaaacagcagaCCTGCCCGTTAGCGTTCAGGAGACGGGAGTGGACAGCGCGATGCTCCGCACAGGGTccaggctgaggaggaggaggactgtCGCTGCCGCAGAGACCCAGGTCGTGCAGAAAagcacaatgaaaaacagacgACAGTGACAAGGGAAGCTGAAGCCAATAGACTCTTATTCCCACCGCACACACGTCCGCAGCGATCCGCTCATCCAGCCCC

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128193 True 646 lncRNA 0.61 2 2449200 2449881

Neighbor

gene id symbol gene type direction distance location
AMCG00010838 NA coding upstream 80641 2364210 ~ 2368559 (+)
AMCG00010837 NA coding upstream 85478 2358513 ~ 2363722 (+)
AMCG00010833 rcc1,LOC107700729,LOC107735284 coding upstream 379700 2067665 ~ 2069500 (+)
AMCG00010831 NA coding upstream 462958 1979619 ~ 1986242 (+)
AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding upstream 589775 1850784 ~ 1859425 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding downstream 159392 2609273 ~ 2615203 (+)
AMCG00010846 NA coding downstream 192492 2642373 ~ 2644326 (+)
AMCG00010853 NA coding downstream 281149 2731030 ~ 2732094 (+)
AMCG00010855 NA coding downstream 295873 2745754 ~ 2753993 (+)
AMCG00010862 NA coding downstream 331693 2781574 ~ 2786898 (+)
G102628 NA non-coding upstream 131630 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 196730 2252103 ~ 2252470 (+)
G102611 NA non-coding upstream 274136 2174796 ~ 2175064 (+)
G102520 NA non-coding upstream 901020 1547810 ~ 1548180 (+)
G102518 NA non-coding upstream 930502 1518399 ~ 1518698 (+)
G102693 NA non-coding downstream 173725 2623606 ~ 2660858 (+)
G102843 NA non-coding downstream 577187 3027068 ~ 3027397 (+)
G102859 NA non-coding downstream 644053 3093934 ~ 3130264 (+)
G102860 NA non-coding downstream 650040 3099921 ~ 3103642 (+)
G102944 NA non-coding downstream 982934 3432815 ~ 3433147 (+)
AMCG00010834 NA other upstream 375958 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 384856 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 485235 1945055 ~ 1963965 (+)
G102535 NA other upstream 648449 1798440 ~ 1800751 (+)
G102531 NA other upstream 657477 1790188 ~ 1791723 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other downstream 306415 2756296 ~ 2762226 (+)
AMCG00010856 NA other downstream 319259 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 852075 3301956 ~ 3310953 (+)
G102921 NA other downstream 881703 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 881838 3331719 ~ 3338416 (+)

Expression


Co-expression Network