G102860


Basic Information

Item Value
gene id G102860
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3099921 ~ 3103642 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128478
aataaaaataaaaataatttaactcaGAATGAACTCAGATAGAGTAAATACACTTCTGGACTGAGAACACTGTCGAGGCCCAGAGCAAATGCAAGGATTAAATGGGACTGGAGAACTTCAAATACAGGGGGGAATAAAACCATGTGTacataaagaacaaaacatttttaattaaaaaaagataagaatattaatattgatgcTAACTCCACTAACAGCAAACAAATATGAAAGTGCTGTGTCTTCACCACTGGCTCTTCACACTGTCACACTTAAACATGACCCATTACATTGACATCCTTATTTCACAGCAACTGAGGTTAAAATGGCTCAAACTTCGATATTTATCCCAAGACAACCATGACCCATAGGTGATGACCACTGCGAAACACTATTCCCTCCGGCCTACAAGAGACGCAAgacatttattgcattttcactAGAATTAAACACCTGAAATAAGGCTAGTTTAACATAGTGTTGGTACTTTGTTAGATTGTAAAGTACATGGGattaatgacaataaaataacaacaacttcAGGGCATAAGTCTGGTGTATAGAGTTATCGACTAAATGGTGTACACAAAATCTGACCGACAGACCGACACCAGGGTCTGGAAAGGAAATTACCAGAGACTATTCAGTATGAAGTTAAAACAGAGAAAGATCAACTGTGCAAATATTTCTAATACTTCACAGAATTATGAttctcttaaaaacaaacctgtgtGTGTTCCTGCCCGTTTCTACACGGCtatcaaacagaaaaaaggtttCAGTCAGGCTGTTTAAGCTTGGTTTCTAAATGCCATTAAAACTGAAGGTGCCCAGCCTATATTAGCTTATATTAACCCTAGTTTGTGGGcacctgaaaatgtaaatgagtgCATTCCACGTTTCTCTTGTAACATCACATCCGGCATTCAAAATCATTCTCCTCTCATATCCAATATAGATTTTATCTTTATAAAAAAGCTCTGCATTCTAAGTCCTCCTCACAGCAAGCAGCACAGCAAGTGTTTTCAGAAAATGACGTGATTCACAGAAGGAAATGAGAGTGAGAGCTAAAAACTAACTATAAATACAGTAACCTTGATATCTCTCTATTGGTCTGTGTGTGATAGGAGAGAACTGAAAACAAGTCCATTATAACTACACTGGATTATAgactttcacacaaaaaaaagacacacagacctgTAAGccgaacaaaaaaacatattatatatatatatatatatatatatatatatatataaaaatacatacatatacatacatacatacacacacaaagataatGAAGAGTCTAGTTAGTGTCTGTGCACGATTCAGTTGGGATGTAGTCAGTGTTTAATGTAGTCCAGTCTAACTGATCTCAtatgaacagaaaacatttgatgcttgtgaacaacaaataacagaaaagaGTTTCTCAGAACCTGTCCTCCGCCACTCCTCAGTTCAAACTATAACCGTTCTCCACtcacatccatccatccatccatcatgACACCCCCCACACCGATTCAATGCCTTCATCGCCTCCAGTCGAGATGCTGCATGATGCAAACTGGACAAGAAGCGTGTTGGACCGAAAGAGCGCAGGGCAGAGGTGAGGGAGGAACCCGGGGGAAACGGTCCCGAGCCCCAGGAAAGGCCCGCAATCCCGTCAGCGTGTTTGCAAGTCCGCTGTAGCACACCTTCCGGACTGAAACCCATCTTCAGCAAAGGCGCTCGGCAGGAGGAACGAGAGGCAGGAACCCAGGCCAGGCAGGAGATCAGAGAGAGCGGTTACGTTCTTGAAAGCAGTCTCAACAAGAGTCAATGAGACGGGAGGCTCGTCGTGCAGAGGCTGCAGTGCTCCTCTGCGATTgcaaaaaaaccaacaaaaaaactaaacacaaacacaacagaagTGTCCTTACAGAGCACAATGACAATGACAGGGCTGGAGGCGGATGTTTTGAAGTTGGACTGGAAGGGCGAGCTGAGGTTCTCCGAGTTGAGGCGGGCGGGCGTGGCTTCAGCGATTGCGCCGGCCCTGCGGGTCTCTGGCGGCCGGTGCGGTGATGTGATGGAGCACAGTCTGGCCCTCGCGGCTCCCGCGTGGGTGCGGTTCACAGGCACAAGCCTGGCAACAAACGAGGGGAGTGAGAGCGCGGCACAGACGGGTGGGGCGGTCCTAGCCCATCGCAAAGCGTTCCTCTGACATGGCATGCCCGGAAGCTCCAGTAAGCACATACGccattgcaaaaaaaatattttactacaCGTCAGGGGATGAAAAAGGATAGGAAGCAACAAGGCTGAAATAGAACAGGATAAGATGGAAGGAAGAAAGGTTTATCAAGCCATTCCATTGGTCAGATTCTTGCACAGGAAAACCATTTCAATTCTGgtttgttacaaaaaaaaaaaaaaaagaatactgcAGTATTTCTTATGCATAATAAATGTGTGCTCTGGCTTTCTCTACAGAGGTAGTGCCGATATAATCTGAGCATGCGGCCGTTTCAGTGTCATGCTACGCAACTCGCTTCCATAAACATGCAGAGCAGAAAGAACCCATCTATGCGGGTCAGATAAAACGTGGGAGAACAGAGAAGAGACTGACGATCAGAGCTTTCCCCGTACATCAACCTACCATGGCTCTCAGTTCCTCAATTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128478 True 2675 lncRNA 0.43 2 3099921 3103642

Neighbor

gene id symbol gene type direction distance location
AMCG00010870 NA coding upstream 91630 3004761 ~ 3008291 (+)
AMCG00010869 NA coding upstream 100818 2990631 ~ 2999103 (+)
AMCG00010863 cf191,LOC106605955,LOC105018927,LOC106592819,LOC102308631 coding upstream 110240 2984975 ~ 2989681 (+)
AMCG00010865 epb41,LOC106589039 coding upstream 187870 2902803 ~ 2912051 (+)
AMCG00010866 NA coding upstream 204597 2893018 ~ 2895324 (+)
AMCG00010876 NA coding downstream 8792 3112434 ~ 3128249 (+)
AMCG00010875 NA coding downstream 41472 3145114 ~ 3167623 (+)
AMCG00010874 zmpste24,face1,LOC107670834,LOC107654896,LOC102792402 coding downstream 69180 3172822 ~ 3179031 (+)
AMCG00010882 LOC104921322 coding downstream 76318 3179960 ~ 3182656 (+)
AMCG00010881 LOC106588497,LOC102218321,LOC107094257,LOC103154989 coding downstream 79477 3183119 ~ 3188870 (+)
G102843 NA non-coding upstream 72524 3027068 ~ 3027397 (+)
G102693 NA non-coding upstream 439063 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 650040 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 782351 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 847451 2252103 ~ 2252470 (+)
G102944 NA non-coding downstream 329173 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 331277 3434919 ~ 3457657 (+)
G102959 NA non-coding downstream 356220 3459862 ~ 3462503 (+)
G103035 NA non-coding downstream 489026 3592668 ~ 3593407 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 1184381 4288023 ~ 4290680 (+)
AMCG00010856 NA other upstream 321888 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 337695 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 1026679 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 1035577 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 1135956 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 198314 3301956 ~ 3310953 (+)
G102921 NA other downstream 227942 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 228077 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 317440 3421082 ~ 3428429 (+)
G102947 NA other downstream 332976 3436618 ~ 3443534 (+)

Expression


Co-expression Network