G103078


Basic Information

Item Value
gene id G103078
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4049938 ~ 4083586 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128774
CGGCACAAACCAGCTGGAGGTGGACATGAACGATCCTGGGGGAGAAATCTGCTTCTCAGGATATATCTGCcttgctttttttcttccactttcCATATTTTAAAGAACGTGTCAGTGATGTGGAGATGGTCTAAGCGCACCCCCTCCCCGGCACAGGGCGCTGCGGACGAGATGCCCACTGTGACAGACCGACATACCGGGTGGCAACCCCTGGGGCTCCCATTTACGTTGAGCAATTTTTCACTTATTAAGGTCTCCTTTGGTCTACCGCAGCCAGGCATGCTGGTCGACATTACAGCCCTGATCTAGTCCTGCAAGCTCTCTGGGGGGATGCTCACAAGCAGAGCAGCTGACCCGAGAGTCGTgcggaggggaaaaaagcagagAAAGGAAAGGCTTGGTAGACAGCAGTGAAGTACCTCTCCAACTCTGCTACCTCCGAGAAGTGCGCCCGGATGAGCTCCTATTTTCTGCTCCGTAATTTGAAACAGCAGGAAGACATTCCTTCCAATTGTGCACGATTCCGCACATCGCTGGGAAAACATAATGGGACAAACAGGCTGTTCTACAGACACGcgAGCGCTCCAGCTGCCTGCTGTGCTTCTTCCCTCGACTTCTGGGAGAGACTCCTGCCTTGGACTCCGCCTGTGGTTTCGTGTGCGCTTCAAGTTTTTGGAGATTGTTTCCTGGCTAATTCTGGAGGTATTTTGTGGTTCGAAATTGATAATAAATATGGGTTGTTAACATGTCTCGTTGGCCGTATTTACCCTCTGTtgaactcattaaaaaaaaaaaaat
>TU128775
CGGCACAAACCAGCTGGAGGTGGACATGAACGATCCTGGGGGAGAAATCTGCTTCTCAGGATATATCTGCcttgctttttttcttccactttcCATATTTTAAAGAACGTGTCAGTGATGTGGAGATGGTCTAAGCGCACCCCCTCCCCGGCACAGGGCGCTGCGGACGAGATGCCCACTGTGACAGACCGACATACCGGGTGGCAACCCCTGGGGCTCCCATTTACGTTGAGCAATTTTTCACTTATTAAGGTCTCCTTTGGTCTACCGCAGCCAGGCATGCTGGTCGACATTACAGCCCTGATCTAGTCCTGCAAGCTCTCTGGGGGGATGCTCACAAGCAGAGCAGCTGACCCGAGAGTCGTgcggaggggaaaaaagcagagAAAGGAAAGGCTTGGTAGACAGCAGTGAAGTACCTCTCCAACTCTGCTACCTCCGAGAAGTGCGCCCGGATGAGCTCCTATTTTCTGCTCCGTAATTTGAAACAGCAGcgAGCGCTCCAGCTGCCTGCTGTGCTTCTTCCCTCGACTTCTGGGAGAGACTCCTGCCTTGGACTCCGCCTGTGGTTTCGTGTGCGCTTCAAGTTTTTGGAGATTGTTTCCTGGCTAATTCTGGAGGTATTTTGTGGTTCGAAATTGATAATAAATATGGGTTGTTAACATGTCTCGTTGGCCGTATTTACCCTCTGTtgaactcattaaaaaaaaaaaaat

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU128774 True 798 TUCP 0.50 4 4049938 4083586
TU128775 False 716 lncRNA 0.51 3 4049938 4083586

Neighbor

gene id symbol gene type direction distance location
AMCG00010908 NA coding upstream 25936 4021061 ~ 4024002 (+)
AMCG00010906 LOC107592052,LOC104955441 coding upstream 103017 3916289 ~ 3946921 (+)
AMCG00010907 NA coding upstream 156372 3889963 ~ 3893566 (+)
AMCG00010905 LOC107688368,LOC107602377,LOC107654743 coding upstream 214889 3831314 ~ 3835049 (+)
AMCG00010903 NA coding upstream 372848 3670455 ~ 3677090 (+)
AMCG00010913 gnl2,LOC107700739,LOC104945619 coding downstream 55081 4138667 ~ 4150872 (+)
AMCG00010911 snip1,LOC107700737,LOC107755266,LOC107597115 coding downstream 83592 4167178 ~ 4171008 (+)
AMCG00010912 meaf6,LOC106589015 coding downstream 87897 4171483 ~ 4176000 (+)
AMCG00010915 fhl3,LOC107587754,LOC107716861,LOC107704953 coding downstream 137116 4220702 ~ 4228928 (+)
AMCG00010916 NA coding downstream 156347 4239933 ~ 4250048 (+)
G103035 NA non-coding upstream 456531 3592668 ~ 3593407 (+)
G102959 NA non-coding upstream 587435 3459862 ~ 3462503 (+)
G102945 NA non-coding upstream 592281 3434919 ~ 3457657 (+)
G102944 NA non-coding upstream 616791 3432815 ~ 3433147 (+)
G102859 NA non-coding upstream 919674 3093934 ~ 3130264 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 204437 4288023 ~ 4290680 (+)
G103150 NA non-coding downstream 354291 4437877 ~ 4438136 (+)
G103152 NA non-coding downstream 452751 4536337 ~ 4619656 (+)
G103258 NA non-coding downstream 1050641 5134227 ~ 5140721 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding downstream 1270183 5353769 ~ 5355664 (+)
G103030 NA other upstream 469661 3577235 ~ 3580277 (+)
G102947 NA other upstream 606404 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 621509 3421082 ~ 3428429 (+)
G102921 NA other upstream 651432 3331584 ~ 3398506 (+)
AMCG00010886 NA other upstream 711522 3331719 ~ 3338416 (+)
AMCG00010922 NA other downstream 550886 4634472 ~ 4642403 (+)
AMCG00010979 NA other downstream 2303450 6387036 ~ 6395484 (+)
G103542 NA other downstream 2558397 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 2808811 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 2987847 7071433 ~ 7103508 (+)

Expression


Co-expression Network