G103473


Basic Information

Item Value
gene id G103473
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6384481 ~ 6386604 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129292
ATTTGTTCTCTGAATCACTGGATagttaagatttgtttttgtaaaagttTCTATGTCTTCTGAATATccataaacaggaaaatatgtCCATAATAGGTGGTGTTAATGAATCACAGTGGTTATTGTTTTAGATTGAGTTATtggtgaattaaaatgtttgtaggTCACTGCCTGCTTCCCTTCTAAATATAAACTTGAATCTTGAGCAGGAGTTTTGCAGTATAGTGTTGAACACTCATGCTTGTTGAATCAAGACCTTCTCATTTATAATTTTCTGACAAGGCTGTAAATTACATCACTTTCTTCTGCTTTTAACCCCCCGCCCCCACAAGTAAACTACTTGACTCATGCTCTTTTTAGCCCTTTTAGTCTTCTGTGTAGCAGTAAGATCAATAATAAAAGTTGAAGATCAGTTTGCATTGTAGGAAacttttaattttctatttttaggTTTTCTTATTAATGAATTTGAGGCTGGAGGTGATTTAGTAGATTTTAACAGCTTTTGAGCagtgaaaccaaaaaaatatttttaatcttattaaCGGACTtagttaatttttaatttggttaGCAACTtaggaaaacatacatttgcagATTAAACTATAaagttattgatttaaattagcATTTCTCTAAATTATACTAGCTGTGTGGAGCAAAGAGGTCTGATTTGATGTAACCATTTTGTGATCTGACTAGACTTCACCATGGCCACAGAATACCAGTTTCAAAATAGACGCATCGTGGAACTGTGCAGTTGATCTAAATTTGGCATCCAAAATCACATGGTTTTTCCTGTTGTTGCATTTACAACcggaaagagaaaaaacactcATACTTCCAAGAATTATGTAagtatttactttttgtattttaactcCTTCCTTTTGTCACCTGACTATCTATCAGGGAAGCGTGCTTGAGGCTGCCCTGACCTGTCATGTCACGATGTCGACTTGCTAGGTGGGGGTCTGAGATGAAGATAGCATTTGGACTCCAGGgtaagaatgtattttaactgtaatttttttccctcatcTAGGttaacaaaagacaaaaactaaaacaaaaccacaaatcaCTACTGGTAACCTTGGGTGATGCAGGAAAAAAATGTGACGTACAAAAAAGACTCAACGTTTGGCTGTTGCAACAAATGTTTACTCTTGCAACCACGTCACACCTCACTATtgagcatttttacatttacttcaGCAAAGTTTCGAAGTTAATTCCAAGGTGGTGGAGCTCAATAAGCAATAGGAAATATTTTATAAGTTCACCTTTTAGTGGAAAGTTTTATGGCAGTCCTCTTTGGTTGACCATTAACAATTTTTCTTCACTGGCATATATTTGTTGAGTGATCTGTATATTTTACACCAGTtctagaaataaagaaaaataaattgtgacaAGCATAAAACCTCCATAATGAACTTTTACAGTCAATgtaaacaagattttttttttaaactattgacacttaattttatttgtgatgAGTAGAAAGTACTGATATGTTGTACTTTTCATCACATATTTCCACATTTCCGTTTTGTGAAATGCagttaaataagttaaaaaggCTAACTCATATCAcaagcaaaattattttataaaattcaAAAAAGGTGAGTAATATTGGCAAAggtacaatacatatatttttctccaAGGGATTGTGCAGTTAACGAGTTCCTCTTCTTAAAGACAATGCGGTAGAGGAGATTAATACTGACAAATACAGTCATCTTTACTTGACCGGACACATGAACAATGTCTTTGAACACTAAGATTTAATGTGCATTTTGGATAGTACTTCTcaattttatttggcttttAAATTTTTCAGCTGTTGGAAAAATAGGATTAATGACACTGCtacaaattgtaatttgttgagattattttttttaatggtcacttaaatgtaatatgtttttgaattGGTAATGATTTCACCAGTTCTCTAATACATTTGCTCTATCTGTTGTGATAAAGGATTAGAGAGTAGTTACAATTCATGTCTGATTGCAGTTGTAGGCAGGGATGCCTGTTTATTAACTTTTTCTCCTCCCCTTTTCCTCTGAAtgtcaataaaaatgaatgaactcCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129292 True 2124 lncRNA 0.33 1 6384481 6386604

Neighbor

gene id symbol gene type direction distance location
AMCG00010973 htr1d coding downstream 210546 6172808 ~ 6173935 (-)
AMCG00010970 NA coding downstream 306853 6074611 ~ 6077628 (-)
AMCG00010972 NA coding downstream 352057 6028880 ~ 6032424 (-)
AMCG00010971 dnajc8 coding downstream 369664 6003963 ~ 6014817 (-)
AMCG00010968 NA coding downstream 395202 5977922 ~ 5989279 (-)
AMCG00010975 hnrnpr,LOC105896414,LOC106562977 coding upstream 7096 6393700 ~ 6398157 (-)
AMCG00010978 rpl13a coding upstream 14022 6400626 ~ 6404255 (-)
AMCG00010980 NA coding upstream 27535 6414139 ~ 6415012 (-)
AMCG00010976 NA coding upstream 32778 6419382 ~ 6422777 (-)
AMCG00010977 NA coding upstream 36962 6423566 ~ 6442741 (-)
G103362 NA non-coding downstream 768628 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 1006255 5359975 ~ 5378226 (-)
G103309 NA non-coding downstream 1050224 5331732 ~ 5334257 (-)
G103149 NA non-coding downstream 1958909 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 2231733 4152518 ~ 4152748 (-)
G103503 NA non-coding upstream 127259 6513863 ~ 6514123 (-)
G103539 NA non-coding upstream 237477 6624081 ~ 6627452 (-)
G103556 NA non-coding upstream 368689 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 729380 7115984 ~ 7171805 (-)
G103658 NA non-coding upstream 802481 7189085 ~ 7189583 (-)
AMCG00010966 NA other downstream 410174 5965133 ~ 5974307 (-)
G103395 NA other downstream 635917 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 1059057 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 1243972 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 1255340 5115715 ~ 5129141 (-)
AMCG00010988 NA other upstream 241966 6628570 ~ 6644723 (-)
G103832 NA other upstream 1551533 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2432947 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 2835664 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 3214773 9601377 ~ 9619279 (-)

Expression


Co-expression Network