G103540


Basic Information

Item Value
gene id G103540
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6628488 ~ 6629990 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129371
ggaacgggagcttcgtgccctggatgtgcatctcacaaatctccatcaactatcagctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatatatatatatatactgagaaattaattttctcaatATAATCCAGAGGCTTGGTTAAACCTCTTTCAATGGCACAATGAACCATACACACATATTGAAAACAGGCGATTCTTTATACACAACTCATACAGGAAGCTGGAAAGAGAGCGGAAATAGTTGAACCAATAGCTGATGAAGGGCAATGCTTTAGTATTTTTTCctagtttttattgaatgtatttaatctataatgtatacatttattttaaagcacaacaGGTTGGGTCTAAATTTGTTCATCTAAAACGTTTGGTTGATATTGATACTGATATTGATATAAACAACATAACGCCTAAGGAGAAGTGAAAGGCACTACATTGAATCTTTGTGTGATATAGtctcttttacatttaaattatgggCAGGCATGACGAGTCGATGGCAGACTAACTGCGTTCCAGAGGCAAAGCACTGGAAATTCAGTTCTACAGTGCAGGCATGACAAACAGAATTCAGATTTAATCCCGTAATTCACTTTAGCGGCAGCAACTTTCATTTAATCACGCATTATGTAATCAACTAGGACCACTTAAATTTCTTCAGCTTTCCTTCAGTCCTgcactttaattatattttcacctGAAATGTACTAAAGTGACAAGCACCCAGTGAACAGCATTTGTCTTGtaatcttaataaataaactgattcaAATCAGCTCATTACACAGATGGCGCTGCATTTCACTCAGACCTCAGTAGCTTTTAAGGGAAAGAAATAAGGAAACAGACTTGATAACTCAACCACAGCTCCTTTTCCTGCACCACATATCCCTGTCCAATGACATTTCCCCCCTCCACCTTCTCTTTTATTTCCAGTGCTGGGACTAATGGTTGAAAACAACTGAGCTGGAAAAAGTTAAGGAGctagaacttaaaaaaaaaaataataataataataataataataattataattattattataattataataataataaaaaactttttcttttttttccgttttctttttttttgtattgtttttattttgttactttaaaagAGAGTTCTCTTTGTGTTCACAGTCCGTGGAGCAATAGGCACTCTCAGGGCAGCCGCTGGTTATGCATAGAATTCCTCTTGCTTGTCGGGCTTCTGGTAGGTTACTGTGGCTTGCTTGGGCTCCTCCAACGTGTAGCTGCCTTCATCCTTTTTCTTCATTCGGTACACCAGCAGCATGACGAGGAAGGCAGCGAAGAGGGCCCCAACCACACCACCCACGATCACAGCTATGCAGAGAGAAACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129371 True 1503 lncRNA 0.37 1 6628488 6629990

Neighbor

gene id symbol gene type direction distance location
AMCG00010981 NA coding upstream 118526 6493616 ~ 6509962 (+)
AMCG00010974 NA coding upstream 216692 6408918 ~ 6411796 (+)
AMCG00010969 kdm1a coding upstream 576821 6035491 ~ 6051667 (+)
AMCG00010964 NA coding upstream 640808 5977850 ~ 5987680 (+)
AMCG00010967 NA coding upstream 650673 5977080 ~ 5977815 (+)
AMCG00010986 fabp3,LOC108426441,LOC105892250,LOC107669374 coding downstream 124934 6754924 ~ 6762123 (+)
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding downstream 145574 6775564 ~ 6782856 (+)
AMCG00010991 nkain1,LOC106570599,LOC107593567 coding downstream 241833 6871823 ~ 6881274 (+)
AMCG00010993 NA coding downstream 374093 7004083 ~ 7022923 (+)
AMCG00010995 NA coding downstream 477295 7107285 ~ 7110941 (+)
G103538 NA non-coding upstream 1050 6623485 ~ 6627438 (+)
G103501 NA non-coding upstream 114670 6513312 ~ 6513818 (+)
G103470 rpl13a,LOC107720993 non-coding upstream 224185 6400638 ~ 6404303 (+)
G103463 NA non-coding upstream 372950 6255224 ~ 6255538 (+)
G103459 NA non-coding upstream 475222 6152993 ~ 6153266 (+)
G103541 NA non-coding downstream 6973 6636963 ~ 6637188 (+)
G103567 ppce,LOC107688393,LOC106923076,LOC103154994,LOC107592053,LOC107706142,LOC107654745,LOC106588491 non-coding downstream 277112 6907102 ~ 6927247 (+)
G103599 NA non-coding downstream 331996 6961986 ~ 6962191 (+)
G103670 NA non-coding downstream 678615 7308605 ~ 7309609 (+)
G103684 NA non-coding downstream 743685 7373675 ~ 7384727 (+)
AMCG00010979 NA other upstream 233004 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 1986085 4634472 ~ 4642403 (+)
G103078 NA other upstream 2544902 4049938 ~ 4083586 (+)
G103030 NA other upstream 3048211 3577235 ~ 3580277 (+)
G102947 NA other upstream 3184954 3436618 ~ 3443534 (+)
G103542 NA other downstream 11993 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 262407 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 441443 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 1918373 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 2900484 9530474 ~ 9549520 (+)

Expression


Co-expression Network