G103556


Basic Information

Item Value
gene id G103556
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6755293 ~ 6762139 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129387
aaGTCTACTGACTCATTGGATGGGGTTTTGTTTagaattttattattttaaacatttacttcCAGCTGAAAACCCAGTGTGACATGTAGTGCTCAATGGCCAGAATACTGACAGACACCTAGAATAGACCAGCAGTGAGGTGTGATGGACCCATAATATATGTACTCTGCGGTATAGGGGCTGTAGGGGTGTTGAGGGGCTGAACATCTTGATAGTTGATCTTGAAGTTCTGGGATCCTTCATTCTGCCTTCACATACGACCGTGTGCTCACTATGGTTCCCATTGTTAAAGTCAGTACGAGTTGGTTTCCATTGACTTCCCTCACCAGTGAGGTCTCTTTATCGTTCCATTTTTGAATATGAATTAGTTTTCCTCCCTCCAACGTTACTAAAGACTTGACTTTCCGGTCATCAGCTGTGGTTTCATCAAATTCCTCGCCCAATTTGAATTTGATCTCTGTGTTTTTGAAAGTGCTCTGTGTCTTCAGTATGATCGTGTCTCCTTCCTGTGAGATGATGGTGGTGGGTTTGGTCATGTAATCATCAAAGTTCTTGCTCTCCTGCAAATTCCAGGTTCCTACGAAAGCCTCAACCATGATGTCTGCAGGGTTGTGGTTGCAGTCGGCAGAGAGGAGATCGCTATGTGTAATACTGATAGCAAGAGAGAGAGTCAGCAGCA
>TU129388
aaGTCTACTGACTCATTGGATGGGGTTTTGTTTagaattttattattttaaacatttacttcCAGCTGAAAACCCAGTGTGACATGTAGTGCTCAATGGCCAGAATACTGACAGACACCTAGAATAGACCAGCAGTGAGGTGTGATGGACCCATAATATATGTACTCTGCGGTATAGGGGCTGTAGGGGTGTTGAGGGGCTGAACATCTTGATAGTTGATCTTGAAGTTCTGGGATCCTTCATTCTGCCTTCACATACGACCGTGTGCTCACTATGGTTCCCATTGTTAAAGTCAGTACGAGTTGGTTTCCATTGACTTCCCTCACCAGTGAGGTCTCTTTATCGTTCCATTTTTGAATATGAATTAGTTTTCCTCCCTCCAACGTTACTAAAGActgACTTTCCGGTCATCAGCTGTGGTTTCATCAAATTCCTCGCCCAATTTGAATTTGATCTCTGTGTTTTTGAAAGTGCTCTGTGTCTTCAGTATGATCGTGTCTCCTTCCTGTGAGATGATGGTGGTGGGTTTGGTCATGCTGCCGACCTGTCTGGTTGCAAATCCCACACCTGCAACACATAAGTGAGAAGATCAGAGAGTGTCAATTACCATGAAGTGCTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129387 True 679 lncRNA 0.44 4 6755293 6762139
TU129388 False 621 lncRNA 0.43 3 6760139 6762139

Neighbor

gene id symbol gene type direction distance location
AMCG00010985 NA coding downstream 142541 6594655 ~ 6612752 (-)
AMCG00010982 NA coding downstream 194369 6556648 ~ 6560924 (-)
AMCG00010983 NA coding downstream 219497 6520570 ~ 6535796 (-)
AMCG00010984 NA coding downstream 245370 6475982 ~ 6509923 (-)
AMCG00010977 NA coding downstream 312552 6423566 ~ 6442741 (-)
AMCG00010987 NA coding upstream 2687 6764826 ~ 6775506 (-)
AMCG00010992 ppce,LOC107654745,LOC107710331,LOC105909065,LOC107602379 coding upstream 163631 6925770 ~ 6938226 (-)
AMCG00010997 NA coding upstream 351496 7113635 ~ 7126366 (-)
AMCG00011003 NA coding upstream 546500 7308639 ~ 7309421 (-)
AMCG00011006 NA coding upstream 603103 7365242 ~ 7390566 (-)
G103539 NA non-coding downstream 127841 6624081 ~ 6627452 (-)
G103503 NA non-coding downstream 241170 6513863 ~ 6514123 (-)
G103473 NA non-coding downstream 368689 6384481 ~ 6386604 (-)
G103362 NA non-coding downstream 1139440 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 1377067 5359975 ~ 5378226 (-)
G103645 NA non-coding upstream 353845 7115984 ~ 7171805 (-)
G103658 NA non-coding upstream 426946 7189085 ~ 7189583 (-)
G103666 NA non-coding upstream 468815 7230954 ~ 7233314 (-)
G103794 NA non-coding upstream 1014869 7777008 ~ 7779941 (-)
G103859 NA non-coding upstream 1294342 8056481 ~ 8056683 (-)
AMCG00010988 NA other downstream 110570 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 780986 5965133 ~ 5974307 (-)
G103395 NA other downstream 1006729 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 1429869 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 1614784 5134053 ~ 5140509 (-)
G103832 NA other upstream 1175998 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2057412 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 2460129 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 2839238 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 2978994 9741133 ~ 9743785 (-)

Expression


Co-expression Network