G103832


Basic Information

Item Value
gene id G103832
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7938137 ~ 8027031 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129758
CTTTATTTCATGCATACTGCACAAAAGGCATCAGCCAAGTACATGAATATTaatagcaacaataacaatggtGATGCAAAACAGTGCTCGTGCATCTCCAATGCAATTGCTCTTGCCTACATGCCCCGGTCACCCCTCTATCCTCCAGTGGGAACTCATCCCAGGCTGAAAAAGAACAGCAGACATTACAGATTAAGGGACACCAAACTtattgtttagttgttttggtTTACCTGTCCACGCTTGAGGTCCTTTCTGGAACAGTCTAGTTAACCCACTAAAATGCTCTGCACCCGTGGTGTGAAGTCATGTACACACATTCAAGGCAGTGCTCACTCATCACTAATAATGGTTTCTGGAAGTGGAATAGAAACAGAGGAACTGCGATCATATGCTCTGATCAAATACTGGTCACATGATTGAGACCGTGCACACTGAATGAACCTTTTGATTGTGCACAATAAATGGCTAAAAATCCATGGCCTGGCAGTCTTGCAGCGGTGCCAAGAGATAGTCACTGTGGCCGGCCACCACCAACTTCATAAAAGGGACTGCACAATATAAGccgggggggggaagaaaaaaaaatcttcactttTTGAAGTTcgtttttcaaaacattactgGAGGGAAAAGATTTGTCAAGAAATTCAACTGTCTGAGTAAAATGCATACTCCATTTTCACTTCTTGGCACTGTCCTAGTCACTAGTCGCAATTCAGTACATCTTATATTGCCAAGTGAATCTGGGCGCTCTGGTGGATTAGCAACTTATTCAGACCTGCGTCACTCAGGTTATAGCAGAGCATCAGGTTTCTAGCAGACACCATATATCTGGAGGAGGAATTCTACACGGGATCCATTAAACCACTTTGGGCCTCAGCTCAGGACAGACTAAAATGAACAACCCATGCTTCCATGAAGCAGAACCCTCCACGTCCCCGAAGCCAGTTAGCCTGACTGGGTATAATTCAGGATTTACGAGATCCTCTGATTtatacatctaaaaaaaaaaaaaaaaaaaaaaagtcaacacTGCAGCCCCTGGGATGAATGGATGAGCTGACTGCCACAATACAAGCGCATGTGTGGCTGTTAATTAGTAGAAATAATCTCTGCATTGTGCCGTCGTAGGTTAGTTGTGCTGAAACCGCAGCCGGAGATTAGTCCAACCTAGAAATGGGGATATGAACCTTATTCTTTTTGTGCTAGCTCGCAACATTGAACCAAAAAGGTTTTGAGAACATGACTAAATTAGACGTTACACAGCATGCCTTAGGgattcaacatttatttaccCTTATTAACGTTACAATAAAACCATGAACATCTTTAAACGTTAGCAAAATAAAgagaaccaaaaataaaattggcCAAAAACTTATTTACAGAGACAattaaaaggTTTCTTGGTTTCTCTATACAGCACAAAATACTTGAAATTTGGGTAAAACATAGGAATGTAGAATTCTAAAAGTTGGTAAGATTTGAAAGGATTGTTTCCATATAACAGTCATTGAAAATGGAGAAGTCTCACTTCCACTGCTTTCATCATTATCAAGAACATGGgagatgagaaaaataaaatatataggatTGCCACGCCattaaaaaaaggggggaaaagggGGATGCAgcgatttgtttttttgcaaattatggaaagaaaaatattcaGTTGATATCTTGACCGCTTCCCATGAACTTACAATCCACATCCGTTTCAATACATCCAACTCCCCACATGGAATGAACTGGCACTCTTACGGTGTTTCATCTTTTGTAGAACTGTTCTTATTAAGAAATTTACCAAGGCAGTGAGTCTGTGGTTaaactgatgtgttttttttgttttgtttttaagaacgTGGCACAATaagtctttttatatatatatatatatataatttttgaaaaaaaaaaaacagttcacaAAGTTCTGGAATACAATCACTCCTCCTTCTGTTCGGAAGGTGCGGGTGTGGAGCTGTCCTCCTCCTTCTCCGCTGGTTTAGAGGACTCTGCGCGGGCCTCCTCTGTCTCCGGCTTGGCCTCGGCAGCTACGGGTGTCTGCTCCTCCACTTTAGCTGGAGCCTCTTCGGTTTTGTCTGCAGGCTCTTCGGTGGCTTTGGTTTCTTGTCCCTCGGCGGCCTCAGATGTGGCAACGGCATCCTCCTTTGGCTCATCTGGCGTTGACTCTTCTTTAGCCTCGCTGGCGGCAGCCGTGGCTTCGGCGGGGCCGTTCTCCTCGGCTTTCTCAGTCTGCTCCTCGGATGGAGAGGCGGCATCCTCCTTGGCAGCTTCCCCAGTGCTCTTCTTGCTCTTCTTCATAGAAAGACCCTTAAACTTGAAGGAGTTCTTCAGAGAgaacttcttcttcttcttcttcggtGTCTCCTTAGCCGCCTCCCCCTCAGGCTTGGCAGCTTCACCTTCGGCCGGTGGTGCGGGTTCAATAGCATCTCCAGCCACGGTCTCGGCCTCCTTTGAGGGTTCGGCAGATCCATTTCCGTTAGTCGCAGCAGTTTCACCGTCTGGTTTGGCAGACACGTCTCCGTTGGTCTTGACATGCCCATTCTCCTGGCCATTGGTCTTTGCCGCGGCAGGGTCAGTCACCACCGCCTTCCCATCCACCACCACTCCCTTGGACAACTGGGATCCCATCGCTGCTGCTTTTGTATGAaaaaagaactaaaaaaaacaaaatggtaaaaaaaaaacttcaaacgTGAGGCTTCAAAAAAAATCCAGCCCGGGAAAGAAGTGGTGCAGCCaagaaggaaaagagaaaaaaatcctcAGTGATGTGGTATTTTCTcggagacaaacacacacagagcaacagAAGATCCGGACGAACGCGGTTGAGACGCCGACCCTCCGAGCGCGCAGACCC
>TU129760
aaaaaaaaaaaaagattaaaaaaaaaatacattgtaaacaaacaaaaagactaaaagctttttttctcattaaaaggTTTCTTGGTTTCTCTATACAGCACAAAATACTTGAAATTTGGGTAAAACATAGGAATGTAGAATTCTAAAAGTTGGTAAGATTTGAAAGGATTGTTTCCATATAACAGTCATTGAAAATGGAGAAGTCTCACTTCCACTGCTTTCATCATTATCAAGAACATGGgagatgagaaaaataaaatatataggatTGCCACGCCattaaaaaaaggggggaaaagggGGATGCAgcgatttgtttttttgcaaattatggaaagaaaaatattcaGTTGATATCTTGACCGCTTCCCATGAACTTACAATCCACATCCGTTTCAATACATCCAACTCCCCACATGGAATGAACTGGCACTCTTACGGTGTTTCATCTTTTGTAGAACTGTTCTTATTAAGAAATTTACCAAGGCAGTGAGTCTGTGGTTaaactgatgtgtttttttttttgttttgtttt
>TU129762
aaaaagaaaaaaaaaaaaaatacattgtaaacaaacaaaaagactaaaagctttttttctcattaaaaggTTTCTTGGTTTCTCTATACAGCACAAAATACTTGAAATTTGGGTAAAACATAGGAATGTAGAATTCTAAAAGTTGGTAAGATTTGAAAGGATTGTTTCCATATAACAGTCATTGAAAATGGAGAAGTCTCACTTCCACTGCTTTCATCATTATCAAGAACATGGgagatgagaaaaataaaatatataggatTGCCACGCCattaaaaaaaggggggaaaagggGGATGCAgcgatttgtttttttgcaaattatggaaagaaaaatattcaGTTGATATCTTGACCGCTTCCCATGAACTTACAATCCACATCCGTTTCAATACATCCAACTCCCCACATGGAATGAACTGGCACTCTTACGGTGTTTCATCTTTTGTAGAACTGTTCTTATTAAGAAATTTACCAAGGCAGTGAGTCTGTGGTTaaactgatgtgttttttttgttttgtttttaagaacgTGGCACAATaagtctttttatatatatatatatatataatttttgaaaaaaaaaaaacagttcacaAAGTTCTGGAATACAATCACTCCTCCTTCTGTTCGGAAGGTGCGGGTGTGGAGCTGTCCTCCTCCTTCTCCGCTGGTTTAGAGGACTCTGCGCGGGCCTCCTCTGTCTCCGGCTTGGCCTCGGCAGCTACGGGTGTCTGCTCCTCCACTTTAGCTGGAGCCTCTTCGGTTTTGTCTGCAGGCTCTTCGGTGGCTTTGGTTTCTTGTCCCTCGGCGGCCTCAGATGTGGCAACGGCATCCTCCTTTGGCTCATCTGGCGTTGACTCTTCTTTAGCCTCGCTGGCGGCAGCCGTGGCTTCGGCGGGGCCGTTCTCCTCGGCTTTCTCAGTCTGCTCCTCGGATGGAGAGGCGGCATCCTCCTTGGCAGCTTCCCCAGTGCTCTTCTTGCTCTTCTTCATAGAAAGACCCTTAAACTTGAAGGAGTTCTTCAGAGAgaacttcttcttcttcttcttcggtGTCTCCTTAGCCGCCTCCCCCTCAGGCTTGGCAGCTTCACCTTCGGCCGGTGGTGCGGGTTCAATAGCATCTCCAGCCACGGTCTCGGCCTCCTTTGAGGGTTCGGCAGATCCATTTCCGTTAGTCGCAGCAGTTTCACCGTCTGGTTTGGCAGACACGTCTCCGTTGGTCTTGACATGCCCATTCTCCTggaaacacaaagagaaacGTTGAACATAAAAAACTAGGTCTCAGTTGTGCACCCATACGGATGTTATTCGGTTAAGTTGAACAAATACATTCgctttgtttcaaaatattaaaatacacacaattccACATTGCCAAATCAATCGGAGTCCCAGATGGTATGAAATGAAGGCGCTGTTGTCGATTCATACAGGGCACGCCTTGATTCTCCGAAAAACGACGCCTttcaccactagagggcagcgTTACTCCATGTAATAACCGAGCGGCAGCACTGCTCTTACACAAAGCAGTCAGAATGGCTGGGCAGGAAGCCGGCTGGCACACAATACATCTACTTTCCATTCCAATAAATGAGAAGGAAAAATGACCCGCAGAAACTGCAATTGAAAcagtttcatttgatttgacCAATTTTAGAGGTGTGAAGTGTCTGGTACATATTTTCTCTTGAAATATGATCCAACAAAGTACTTTAATAGATATAAttgcattattacatttatttcatacatacatatatatagagagagcgTCAGACGGTCCAAACTGGTTTTGCACAGGGGGTGGGTTAATAACCGCACTGGTATATTATCAGTGTGGATTAATTATCCGAGGCTACCGCGTTAACTTcgagcacagaaataaaaactcGCATGTGCAAAATCCCACCGTTTGCATTCATTTGCAGTCGCCGGGCACCGAAAAtaatccctccctccctctattGATCCTGACCCGAGTTGCGTCTGCGAGTCTTTTGTTCTGGCGCATCGATCTGACCAGCCGCCGACAGCAGAGCAACGACCCAGCAGCCTCATCATCAGGTGCGGGGAACACAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129758 True 2896 lncRNA 0.44 3 7970951 7975247
TU129760 False 535 lncRNA 0.32 3 7938137 8027031
TU129762 False 2091 TUCP 0.44 2 7971624 8019522

Neighbor

gene id symbol gene type direction distance location
AMCG00011013 NA coding downstream 195571 7733423 ~ 7742566 (-)
AMCG00011012 fndc5b,fndc5 coding downstream 291125 7632065 ~ 7647012 (-)
AMCG00011008 NA coding downstream 386522 7529457 ~ 7551615 (-)
AMCG00011009 NA coding downstream 430971 7451069 ~ 7507166 (-)
AMCG00011005 NA coding downstream 529441 7392972 ~ 7408696 (-)
AMCG00011021 LOC101067225 coding upstream 4146 8031177 ~ 8037256 (-)
AMCG00011029 eif3i,LOC102790120 coding upstream 34412 8061443 ~ 8065757 (-)
AMCG00011028 NA coding upstream 43815 8070846 ~ 8077484 (-)
AMCG00011026 NA coding upstream 51347 8078378 ~ 8080975 (-)
AMCG00011024 ccdc28b,LOC103357048,LOC102215669,LOC106535222 coding upstream 55387 8082418 ~ 8090075 (-)
G103794 NA non-coding downstream 158196 7777008 ~ 7779941 (-)
G103666 NA non-coding downstream 704823 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 748554 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 766332 7115984 ~ 7171805 (-)
G103556 NA non-coding downstream 1175998 6755293 ~ 6762139 (-)
G103859 NA non-coding upstream 29450 8056481 ~ 8056683 (-)
G103893 NA non-coding upstream 140664 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 314332 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 315553 8342584 ~ 8342818 (-)
G103929 NA non-coding upstream 433899 8460930 ~ 8462662 (-)
AMCG00010988 NA other downstream 1293414 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 1963830 5965133 ~ 5974307 (-)
G103395 NA other downstream 2189573 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2612713 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 2797628 5134053 ~ 5140509 (-)
AMCG00011051 NA other upstream 792520 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1195237 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1574346 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1714102 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3932207 11959238 ~ 11971002 (-)

Expression


Co-expression Network