G103873


Basic Information

Item Value
gene id G103873
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8090966 ~ 8101018 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129817
tcaaatattttattatttttttaacctaaaGAAACGTGTAGACAGTATGAAaatgacaaaggaaaaacatacagaacacaaaaacaaacatgaaaagtaTGTGTGCGATGCAATCTTTGGTACCCGATTAAACAGACCTTGTGTTGACTATATgaaggaaatataaaattagCCAAGAGAGTGGGGCCTTAACAGATAAAATACAGTGACTGTCACTCACACATAAGTACGGTGTAAAAAGTGCATTAAGGACTCCATCTTTAAGGGcgtgtaaaattgtaaaaaaccTATAGGAAGTTTCTGCAGCATAAACTGTGGGACTGCACAGATTTAACCAGCCTACAATGATTTCATCCCAATACAAATCCACACGCATGGAAAATATTCCCCTAGGACATGATAAGAGTGTTTTGTTTAGTCAATCGAATGTATTCATGCGAAAAACATTAGTGTCTCATTCATAACCAGACGATACCTCTATATCTATATAACACCTCTATTTACACTTCTCAacctgcacatttattttttaatctttaagaCAGCGTGTTGGACACAGAACAGTGCTAACTGAATCAACCTCTCCCTTAACACATTTCCAGGAATATCCTATGCCAGAACTCACTGTAATCCGAGTAGCTTCCCAGTTTAACCATTCCACAAAatcattctaaaaataaaaaatgaaaatgagaaattttagaaaacaaaacctccTACTATTACTCCAGATGTGCTGCGTCTCTGCATGTGGCAGCTGGATACATTTACTACAGACATTTACTGCTGCTTACAGATATACTGGAAATCAGTTGGGCAGGGGAAGCAATTACTGAAGATCCACATGCAGTGACGTATACTGTAAATACCCTTTCTGTGTAGCAAGAATCttcaaggtaaaaaataaataaaaatggaatgaGTGAATTTGATTGCATAGTAAAAGGCCTGGGTTTCTCTATCCTTTGTTTTGCCCAAGCTGCAACTGTCTAgcgtgaaaaacaaatacaacaaattccaaggtaagaaaaaaacaaaacaccttttTCCTGCTTAGATTagtttttaactgaaataatacaacCTATCAATGATTATCACtccatacacaaataaaaacaaaaacaaatattcattacattttttgatcTCAAAGAAATAGTGATAATGCATATAAAATGCCACATTCAAAACTGGTCACTGAACATTCGAAGTTGCCTGAGCATTAATAAGGTCAGGTGGTCAATGACAGACTGGTACAGTGGTGAAGTCCTGTACAATTCATTAAAGCCCTGCACAAGCACACAGCAGTCAGTGGAAACCTGGCACTTCTAGAACGCTTCGCGGGAGGAACCGTATGGGGATGCATTAATGTGAAGGAAAGCATCTCCAGAATTTTACCAACAGGCTATGCTGAAAtgaaagagggagggaaaacaaatagatttccagtttcttttttctgcaTCCTTTATCAGGAATGTTGCTTGTATTCCTTTGTAATGATGCTCGGAGTACACACTTCTAATTTTGTGGGTCTTATGGTTTAATTATAGAACTactctgataataataataataaataataataatac

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU129817 True 1595 lncRNA 0.36 2 8090966 8101018

Neighbor

gene id symbol gene type direction distance location
AMCG00011017 NA coding upstream 22602 8066837 ~ 8068364 (+)
AMCG00011020 NA coding upstream 32034 8054877 ~ 8058932 (+)
AMCG00011018 NA coding upstream 39680 8040821 ~ 8051286 (+)
AMCG00011019 NA coding upstream 79748 7995345 ~ 8011218 (+)
AMCG00011016 NA coding upstream 117239 7967340 ~ 7973727 (+)
AMCG00011032 NA coding downstream 326688 8427706 ~ 8433383 (+)
AMCG00011033 rbbp4,LOC107568807,LOC107584269,LOC105015627,LOC107709266 coding downstream 351310 8452328 ~ 8460860 (+)
AMCG00011037 NA coding downstream 436476 8537494 ~ 8546945 (+)
AMCG00011039 NA coding downstream 458182 8559200 ~ 8567070 (+)
AMCG00011038 NA coding downstream 467695 8568713 ~ 8577634 (+)
G103850 NA non-coding upstream 21271 8061279 ~ 8069695 (+)
G103823 fam167b,LOC108234384,LOC101067225,LOC105925981 non-coding upstream 56273 8032729 ~ 8034693 (+)
G103800 hdac1,LOC107562876,LOC108272688,LOC107745719,LOC107584281 non-coding upstream 103053 7985084 ~ 7987913 (+)
G103797 NA non-coding upstream 240937 7849794 ~ 7850029 (+)
G103761 NA non-coding upstream 463049 7624453 ~ 7627917 (+)
G103868 NA non-coding downstream 1377 8102395 ~ 8109235 (+)
G103959 NA non-coding downstream 483112 8584130 ~ 8590598 (+)
G103987 NA non-coding downstream 617930 8718948 ~ 8721777 (+)
G104004 NA non-coding downstream 744948 8845966 ~ 8857639 (+)
G104042 LOC106579881 non-coding downstream 846755 8947773 ~ 8948823 (+)
AMCG00010994 NA other upstream 987458 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 1170035 6892397 ~ 6920931 (+)
G103542 NA other upstream 1448338 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 1695482 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 3448563 4634472 ~ 4642403 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 447345 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 1429456 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 2102599 10203617 ~ 10271863 (+)
G104273 NA other downstream 2717670 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 3542999 11644017 ~ 11651021 (+)

Expression


Co-expression Network