G103959


Basic Information

Item Value
gene id G103959
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8584130 ~ 8590598 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129921
CTAGATTAAATTAgtcaattaacatttaatttaatcattttcagtgtaacagtttatttacaaaatatacatggattttattaatttaatctaacAACTCAATTACTCTTCATGGATACACATGTAACTGCCTCCAATGTTTCCCCATTATCAAAAACTGCTGAAAACTTGTATTTACACATACTGTACAAATATACACTTACAAATGCATAATAAACAGAGGACACTTCTGGGCATTCAACGATTTACATAACGAACATTGGTTATATGGTAAAAAGGTAGGTTATAAATCTGGCTTAATGTCAGATTGATACAGAATGTGGCCCACAGGTGGCAACATGGGGTCCTGGAAGAGGTCCAGGCTAAATAGGCAACCATTCGTAATCAATTGATTAAGGCCTGGAGCAATGAAACATGCAGGTTTCTAACCCACAAACACTTCCAGACGAGACCCCACTCttaacaaaatcaacaaatgtGGTTGTTTGACAAAGCAATTAACCCCAGAATCATCTATGAACTGCTTATATCTATACATTGTCATATGCAAAGATTCAAACATATGTATAACAGgtttataatatgtaatatatatatatgaggagTCTTATTCCATGTATTTCAAGGATACACAATGTATCTCCATCATATTACATGGAACTCCCAGTTGTTATTCTAATGTAGGTTTCCCTTCACATTCCAGAAAAGCTGTGTTACATAGAAGGGATCAGATGTCAGGAAACTCCTCAAATAACATTTGGTTCTTCAGTTTCTTACTTTTTTTACCACATCAATATTCCccttctacattttattttaatgcagcatTAATAGTATTCCACACAAATACTTTGTATAACCCTTATATAAATAGTAAAGAATGCTTAAAGTCCTGCTACTGAAATTTAgctcattaaatgtattaatcatttgACAGATGCTTGTTATGTAAAGCAAGTTACAGGGATAAGGCGCGTGAACGATGGCACCAGCAGCTGCTGGTTAATTTCTTTACAACAGGCCCCCCGTTTAACATCTCATCTCATGGGCAGAGAACGAGGGAGTAATACAATTTGCATATGGTAAGCGATTCAATGTGGGAGCTGAGGCGAGAACGGTTATATTTCCAGTAAACAAGGCCTGGCCAAATGGAGGACTTAGCCTAAGTGTCTGGCCCCTTCCTTTACCCATATCATCTTTTTTATAAGAATTGATTCCAGTACTACAAAAAGCCCTAGCACCAATACTGATAAGGCCCACACATGTAAAAagtggtattttattttctgaattgtaGCTAGTAGCCCCCTTCTCCATCTATCCTCAATTTGAGGTTTTACTTGGAGATCCCTGTCCAtctttcacatttcacaaatagTGAAACCTGTGTAACAGTTTCATGGATAAGAATAGAAGCATTAATATCTCTCAGCTCTCACAAGGAGTTCAATACACCATGTGTccatacaataaatatttaaatcagacCATTGACTTCACTTCTAGATtttcccccacctcccctcagATCAAACGGCNNNNNNNNNNNNNNNtttagttttttttttagattttcatAAGTTCTGAGAAGTAGcaaatcatttgttttgtattttaacctAAAGCATGATTAAATTGTAGTTTATTTCTCGTGCaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU129921 True 1657 lncRNA 0.35 2 8584130 8590598

Neighbor

gene id symbol gene type direction distance location
AMCG00011038 NA coding upstream 6496 8568713 ~ 8577634 (+)
AMCG00011039 NA coding upstream 17060 8559200 ~ 8567070 (+)
AMCG00011037 NA coding upstream 37185 8537494 ~ 8546945 (+)
AMCG00011033 rbbp4,LOC107568807,LOC107584269,LOC105015627,LOC107709266 coding upstream 123270 8452328 ~ 8460860 (+)
AMCG00011032 NA coding upstream 150747 8427706 ~ 8433383 (+)
AMCG00011043 NA coding downstream 53725 8644323 ~ 8654378 (+)
AMCG00011044 NA coding downstream 78461 8669059 ~ 8693522 (+)
AMCG00011045 hpcal4,LOC107691524,LOC107091490,LOC102228321,LOC107562761 coding downstream 214153 8804751 ~ 8806377 (+)
AMCG00011047 NA coding downstream 237719 8828317 ~ 8838500 (+)
AMCG00011048 NA coding downstream 344490 8935088 ~ 8938784 (+)
G103868 NA non-coding upstream 474895 8102395 ~ 8109235 (+)
G103873 NA non-coding upstream 483112 8090966 ~ 8101018 (+)
G103850 NA non-coding upstream 514435 8061279 ~ 8069695 (+)
G103823 fam167b,LOC108234384,LOC101067225,LOC105925981 non-coding upstream 549437 8032729 ~ 8034693 (+)
G103800 hdac1,LOC107562876,LOC108272688,LOC107745719,LOC107584281 non-coding upstream 596217 7985084 ~ 7987913 (+)
G103987 NA non-coding downstream 128350 8718948 ~ 8721777 (+)
G104004 NA non-coding downstream 255368 8845966 ~ 8857639 (+)
G104042 LOC106579881 non-coding downstream 357175 8947773 ~ 8948823 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding downstream 377280 8967878 ~ 8970770 (+)
G104062 NA non-coding downstream 567723 9158321 ~ 9159219 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 31525 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 1480622 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 1663199 6892397 ~ 6920931 (+)
G103542 NA other upstream 1941502 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2188646 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 939876 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1613019 10203617 ~ 10271863 (+)
G104273 NA other downstream 2228090 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 3053419 11644017 ~ 11651021 (+)
G104382 NA other downstream 3075600 11666198 ~ 11671340 (+)

Expression


Co-expression Network