G104042 (LOC106579881)


Basic Information

Item Value
gene id G104042
gene name LOC106579881
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8947773 ~ 8948823 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130035
gcATAGGCCACAAAGAGAGTCCTCAGAATCCCACCCTTACCCTTTCAAAGACTTACATTAGAAAAGCTATGGTGGCTATGACTCCACAAGCATGGTAGGAATGGTTGAACACTTTGGCGTCTTGGTGTATGACAGCCGCATCGATAATGATCCACCATCCACTGAAGAACAAAACCCCTGCAGCTATTGACGCTATAGTGTTCCTCTTCTCACCCCAGTCCACACACTCGCATTCCCCACATCGGATATTATCCATAAATCCAGACATTGTTCAGAGCATATAAGCGGAGTCTTTTGTTAGTCAGATCTCAACGGGAAGATCggcttcatttattttttttccccac

Function

NR:

description
PREDICTED: transmembrane protein 50A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130035 True 347 lncRNA 0.45 3 8947773 8948823

Neighbor

gene id symbol gene type direction distance location
AMCG00011048 NA coding upstream 8989 8935088 ~ 8938784 (+)
AMCG00011047 NA coding upstream 109273 8828317 ~ 8838500 (+)
AMCG00011045 hpcal4,LOC107691524,LOC107091490,LOC102228321,LOC107562761 coding upstream 141396 8804751 ~ 8806377 (+)
AMCG00011044 NA coding upstream 254251 8669059 ~ 8693522 (+)
AMCG00011043 NA coding upstream 293395 8644323 ~ 8654378 (+)
AMCG00011053 NA coding downstream 5383 8954206 ~ 8960198 (+)
AMCG00011056 runx3,LOC106610817 coding downstream 173574 9122397 ~ 9126585 (+)
AMCG00011055 NA coding downstream 192775 9141598 ~ 9155179 (+)
AMCG00011062 NA coding downstream 343810 9292633 ~ 9297651 (+)
AMCG00011064 NA coding downstream 377506 9326329 ~ 9344413 (+)
G104004 NA non-coding upstream 90134 8845966 ~ 8857639 (+)
G103987 NA non-coding upstream 225996 8718948 ~ 8721777 (+)
G103959 NA non-coding upstream 357175 8584130 ~ 8590598 (+)
G103868 NA non-coding upstream 838538 8102395 ~ 8109235 (+)
G103873 NA non-coding upstream 846755 8090966 ~ 8101018 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding downstream 19055 8967878 ~ 8970770 (+)
G104062 NA non-coding downstream 209498 9158321 ~ 9159219 (+)
G104079 NA non-coding downstream 274362 9223185 ~ 9226178 (+)
G104115 NA non-coding downstream 403550 9352373 ~ 9352587 (+)
G104147 NA non-coding downstream 525351 9474174 ~ 9475843 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 395168 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 1844265 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2026842 6892397 ~ 6920931 (+)
G103542 NA other upstream 2305145 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2552289 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 581651 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1254794 10203617 ~ 10271863 (+)
G104273 NA other downstream 1869865 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2695194 11644017 ~ 11651021 (+)
G104382 NA other downstream 2717375 11666198 ~ 11671340 (+)

Expression


Co-expression Network