G104150 (pabpc4,LOC107721216,LOC107659242)


Basic Information

Item Value
gene id G104150
gene name pabpc4,LOC107721216,LOC107659242
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9477567 ~ 9481674 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130186
CCTGTGGCACGGCAGGCATGAAGTAGCCACTGGCAGGCTGGAACTGGTTGATGATGGCGTTGGCGGGCATGGCCCTCATGCCGGCGATGCGCTGCATGTACTGGTTGGTGAGATGTGCCTTGCGCTCCTCTTTGCGTTGTGCCAGCGCCACATACAGCGGCTTGGATCCCACGATGCGCCCGTTCATCTCCGTCACCGCCTTGGTGGCCTCCTCAGGGgatgagaaacacacaaacccgAAGCCCTTGGAGCGCCCTTCCTCCAGCATCACTTGGCACTGGTGATGGAGCCGAAGGGGGAGAACTCCTTGCGCAGTTTCTCATCGTCGATAGTGTCGTCCAGGTTCTTGATGTAGAGGTTTACGCCCTGCGCACACACAGGATATAGTTAGAGCCTCCGTGCACAGCAGGCCACAGTAGAAACTATATACAACCTGTAGTGTGTGAATGCAACCtgaataaactgtgtaaatgcagggttaacCACCCCTCCTGGACTGaacaaatgcattcaatttaaaCGGGCTGCTCAGTGACCTGGTATCGGCTAATCCTCTCCTGCTTCAGCTGCTCAAACTTCCTTTTCAGCTCAGCTTGTCGCTCCATCTTTTTCTGTGCACGCCCGACGAACACCATCTTGCCATTGAGTTCGGTGCCATTCATCTCCTCCACAGCCTTGTTGGCATCTTCGTGTTTTTCGTAGCTCACAAACCCGAAGCCTTTAGATTTTCCAGTGGGGTCTGTCATCACCTTGACACTAAGGATTTTACCGTATTTATCGAAGAGCTCCTTCAGCCTCTCATCGTCCATATCCTCCCCAAAGTTCTTGATGTACACGTTGGTGAACTCCTTGGCTTTAGCGCCCagctctgcctctctctctttccgcGACTTGAACCGTCCCACAAACCTAAACGGGTGGGGAATTAACCAAAATGCCCATTTGTATGGGGGGGACAGGGATGTAAAGGGCTCGGGCAGTGCTTACGCaggatgtttaaatgtttaaatgcttaAACGAAAACCAAATCAAGAATACTGAAGTATACACATCTATACAGTTAAGAAAGATCAATCACCAGGTCCCAAAAATCTCTCAGTTTCTAAAGGTATGTATTGACTTCAGTAGGGTATCTTCAAGACAATTCAAGCAACGGTAAGTCAACAGTAAGAAGTCGCGGTCCAGAATGTTAAAAGATCTGATCAATGTATCAGTTTTTTATAGAAAGGGGGTACATGGCTTCCATAGACAGTCTCTATAAACCTCACTGTCCTCTCTTAATTGTGCAACAATCAGGCAGATGTAGGGTACGAATCTTGGGTGCTAGAAGGATCCACAACACACTAGGGACACCCACAAGTGACAGCAGCTAATTGCCCTCTCAATCAgacaggacacacagacaggttgGGGGACAGACAGATGGACGGACAGACAGTCCGAGGGGGTCTGGCTCAGGACGATTAAGGTGAGAGAGTCCTGTTGTGCTCAAACTGTACCTGCCATCCAGACCTCTCCCTTCTCATCCCTCCAGTACCGCATTCCTGCACCTGATCCATCACTAAAACACACAACCAGgttacacagacagacaggcagacagacggacagacagctCATCAATCAGCCTGCCACTCCACTCCAAAGCGTAGCTGCCTTTATCAGAAGCTTGTGGGGGGTTTCTTTGTGCTGCCACCCAATCAGTCAGTGAGCGGGACAGCAAAAAACAGGATAATTATTGCACAAGCTTTGATCATCATAAAAGATGAAGTGCTTGCACCTGCAGGACTGTGTatgcactgcactgtaacaGGTCCTCACGATGCAGTCTTGCATGAAAAGGTCAGCTCTTCCCATAAAGCGGGAAAAGTTAATAAAGATCAAGAGATCTGAGGAGTTCTCTCATGTACAACTATCTCTGATACATTACACATTGAGACCAAACAAATGATGGCAGGCTGTAGGCAGAACAAGATCCTCTTTCAACAGCTACAACACCTGTTACTATTATTACAAAGGGGCAAGGGGAGCAGATTGCAAACAACCATATCTTCCAAATCTTGGTCATAAAGGTCTTGAGGAAAGAATTACAGGTAAACTATGTTAACAATGTTCGAGAGCTGTACTGTGCTTGATGttgctttaataaatacaagtgtAATAAATTAACTGACATGCACTCCACCTCTGAGTCTGGTAATGAGAAGATATTTGCAGGCAACAGATGTCAGAACGCCTGTTACTGCAGTTGTGTTTATCTTGAGGAGTAGTGGGAACCTTGGCACCTTACATTCCATTCTATTGCAATCACTTTCTCCAACATGCATTTTTGTTACAGGATTGCACCATCTCTTTGCAACTTCTCCTAAAAATGTATCTATTCAGACAGTACCTGCACAACCTTCTTTACCATCTCCCTTCTTTGCAACTTCGCCATACCTGTCATCATGGACGATCAGACCACCTGCACTTTATGACTACATCTTAGTTTTACTGCATGTTGCTCATTGGAATGTACTGGATTGCAATGCTACACCTCTGTTGCGGCAGCTTCTGGATCTTGTTATGTATGTTGGTTCACTGTACAGCTAATTGTATTGATATtattgatataataatataccGTTGTCCACACAATGTAACCTTGCCAGTTTATCATGAGTGTTAGAGGATGTCAGtccaccaaaaaataaattattaaaacgGTAAACAATCTCGCACTAGAGCTCCTTGACTGCTCCAGAGGAGCAGTGTGGCTCTGAGGCCTGATGCTTTGGACACTCACACCTTGCGGTCGTTCAGGAGCATCCCATTCATCTTCTCAATGGCGCGGTCAGCTGCGTCCTGTGTCTCAAAGTGCACAAACGCGTAGCCCTTCGAGCCGTTCTCATCACACACCacctggggagagagacagagggagagggtgaaTGTCTAGTTACAGGCACTTCATGATGCACTGAGCCAGGAGTCTCAGTCATG

Function

symbol description
pabpc4 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to several human genes including PABPC4 (poly(A) binding protein cytoplasmic 4).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF103 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130186 True 2982 lncRNA 0.47 5 9477567 9481674

Neighbor

gene id symbol gene type direction distance location
AMCG00011063 NA coding upstream 10055 9459334 ~ 9467512 (+)
AMCG00011067 NA coding upstream 37776 9435209 ~ 9439791 (+)
AMCG00011066 NA coding upstream 47487 9425182 ~ 9430080 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding upstream 68553 9391398 ~ 9409014 (+)
AMCG00011074 NA coding upstream 86466 9344531 ~ 9391101 (+)
AMCG00011075 NA coding downstream 70130 9551804 ~ 9557387 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding downstream 84846 9566520 ~ 9574704 (+)
AMCG00011080 gale,LOC107583591,LOC107721820 coding downstream 93455 9575129 ~ 9581745 (+)
AMCG00011079 NA coding downstream 109398 9591072 ~ 9592187 (+)
AMCG00011082 NA coding downstream 242136 9723810 ~ 9732443 (+)
G104147 NA non-coding upstream 1724 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 124980 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 251389 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 318348 9158321 ~ 9159219 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 506797 8967878 ~ 8970770 (+)
G104204 NA non-coding downstream 211470 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 390979 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 1074055 10555729 ~ 10617196 (+)
G104271 NA non-coding downstream 1241876 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 1890880 11372554 ~ 11377085 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 924962 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2374059 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2556636 6892397 ~ 6920931 (+)
G103542 NA other upstream 2834939 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 3082083 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 48800 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 721943 10203617 ~ 10271863 (+)
G104273 NA other downstream 1337014 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2162343 11644017 ~ 11651021 (+)
G104382 NA other downstream 2184524 11666198 ~ 11671340 (+)

Expression


Co-expression Network