G104255


Basic Information

Item Value
gene id G104255
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 10555729 ~ 10617196 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130328
GTGCTGTGTTAacacacacacacacacacacacaaacattttggaGATTTGGTAAGTTTGATGGATAGActatgaggggaaaaaataaaaaattaaaatgaactgaactgtaaatgttaaaaaacagatttgctGTACAATTATATGTTTGCTTTCAGAATTTTTGGGTGACTGTGCACGAATCTACTGATTGATTGAGGTAGTCAaccttaaaatgtaatgtaagacAGGGCAGCCTCCTCCCGTTTTCTGTAATTGGCCAACTGATGCATTGTGAGCTACATTTAGAGAGCAGAGGTACTGTCAGGGAGCAGAAGGGCATGTGAAATGGCTCATTGTGTTTACACATTTAGGTTTTTATTATCCTAGGATTAAGAGTCAGTGCAAAATCCACTGGCAATGGATAACTAAGATGTCAGCTGTTATGTGGCAAAAGTTCACCTTAATCAGAGCAAATGGCATGCACGGTCACATCTGCCTTCCCcatgtatatctgtgtgttgCGTTTCACTTGATGTATCATTTTCAAGGTGGGATGACACAATCATTTAGTCAATGTTCAGCCCCAATCCTTACTTCCCAGAGACCAGAAGTTGCCGTCTCTATCAGATCTTAAATGTGCTCTGATGTATTCAGCATGAGTATCAAAGTATTTACATTGTTAACTTTGAGCAGGTTAGGTCCCGCTGTGATATTCCTAGGATCTGCTTCAACATGGTGCCAGGCAATGGTATTGATTGGACAAGGATTGTGGGATAGGTGTAGGGGAGGAAAAGTAAGGTTGAGAGACAGAAAATATCAGAAGGTTGATCAATGGCAGAGTTTTGTGAGCAGAGATATCAGGTAGTCCTGATAACAGAGTAATCTGAGGGAGATGTACAGTACgtagaaaaaaagataaagaaacacCACGGGGGAAATGGCACAAGCTGACGAGACACACAgcctgttttataaaataactggaaaatCCGAGGTAGGGCAGTCAATTCCATCATATCCAGTAACATCGACTTTATTACCCAAATCAGGACAAATCCAGCTTTGTGTGTCATTCTTCTTCAAGTTTAATCAGGGGTAGTGATAACACAggtaaacaaaaggtgaagcCAAGCTTGAGCAAAGTGTCAGATATGGAGGTGTTACACTAAAATCATAAAAGCACAATAACTGGGTGACACCTGTGTGAGGGCCCCAAGCACAACTGTCAAAGAGGCCCTTTGTAATGTTAACCCAAATATTGTTTTCGGTTGAATTTAGATTACATCTTAGGATATCATCATTATAAAGGTTTGTGGTAAGCGGTGCGATGTATAGGGCAACAGGAGGCTGACAGAGATCTTCTACAGCTAGTCTCCAGTGGTTTCCATGTTCCATTACAACTGATTGCTTGCAGGATATGCTGAAAACATTAATGAGACTCTTACTTAAAGCTGTCTTTGGAGTACTAAAAAAGCATGCATTGGTACTGCTTTGAAACCCCTTGACACTTGTCTGTTTTCTCAATGAATTCAATTGCCCTGTGCTCTGGTAGTTTGAAACATTTCCCTGATGCTTTCTTGTGTGGAATAAAAAGACTTCCTTCACTAAATGATATTTAAGAAAACTCTGGCCTAATTCAGTTTCAATACAGTCACTAACAAACTATATTTTACAGTCAGCTATTGGACTTGGaaagttaaatatttgttgAAATCTAAATGAAGATTAATGAATTAAGAATTGCCCATCTTTGTGGTCCATTTAGTTGGAAGGTTAACTGCCTTGTGTCGTATCACACCCAATTTCAATGAGATCTGTCTATAGGAATACACTTCATTaagttctgtgttttagttCCAGTGCAACTTCGTTCTTCTGTATATTGACCAACCATTGTTTtttagttgtgtgtttttttaataagctgAGTGGCAGTGGGAAAATATGTGCTGCTGAGACTTCTGAAGTAAATGAGGCCAAAAAAATACAGCATCATCTATTCATAAAACTCCACTCATTAAAAAAGTGGCTTGCATTTCATCTACAATTTTACAAATGCCCTTTATATAAGAGGCAAATTATGGTATGCAAAATTGCTTATATGTACATAAAACCTAATGAGACTCTTTTGTGCCACTCCACATTTTTAGAGTGCTTTGCCATATTTCGCCCTTCAATTCAATTCCTCCTATATTTTCTGTTATGTTTGactgtatatacagacacaaatgcacacactgtATTATAAAAGACAATCTTGTAGTTTTGAGTGTACACAATCAacaccattattaaaaaaaaacattctggagAGAATGGTTGATCGTAATCCTCTGTCCTGTAGACATGCTTAAGGTATTGAACATGTTTTCCCCTGAAACACTGTATTACatcactttttattaatttcgAAGTTGTGGTTTCCATACTGGGGCGATATATAGTGCAAGACTTTGAAGAATGTATTGTCCATGCTTACTTActctataaaacaaataataatcaaataacaatacagagaaaaacaagcacattaaCAATTCATTCATGAAttcatcattcatttattcattagtTCATTTCGCcaactaaaatgtaatgttcagATAGCATGGTTTCAACCAAATGTGTCCAAGATTAACAAATTAAGCATGCATTTTAACACCTCAGAATCAGACCAATTTAttatgctgtaaaaaaaaacacaaaaaacaatcacGGCAAAACAGTATGTGTATTGTAAAAGCAGAGCTGTAACAGTTTTTTCCCTCAGATATTTAAAGTGACTCATTTAATTGTTCAGTTGATTCAGAAAATACATACCTTTCagacagtattttgttttcagtatttcagaATTGCACTCCTTCACTATCTCCTCGCACTGTCGATGTATccttaaaaacatttaacaacaaaatagtttgtaaattatcattattgtgaGTTTCTTAGACAATGCAAGGCATGTTCTTGTTATTTAtgtcattacatttctttctctatttctcttctttttttattccaaataaacAATGACATGTCGTACAAGTTACATGTAACCATTATTCTTCATCGTTAGTTATCAAAATGATGGAATGCAATGCATTTTAGTTGTCCAGCTTATTTTTCTGGAAGTGTGTATAAAGTATATCTTAGGAGAAAGTTCAGTAGATATGTAGTACTCTTGAAATGAAAGACtactttggatttttttttttacctgcagccgagaaaaaaaaaaagtgccttaGACTATTATGtgatactgtttttgtttttcttttgaaataaataaaagtggcCTATGATATTCATATTTGCACAAAGCAACATTAATAAAGGTCTATTTTATACTTTTCTTGTGCAAAACAACGATGCTACAACTTTGTACTTCAGCCGTAAAGGTTTGTATAGTCAGAAAGGACATGTACAGTACCTTTATAATTTGCAAGTCAGCAACTTTATGGTGATTTTTGAAGGATCTGCAAaatccccccaacacacacgaCGTAGTTTGTAGCAAAGTATAGGATATGTGTTCTTCATTGTAAATGTCCTATTACATGCACTGTCTGTAATAGGTTTTGGGTATAAAATGcactccttttgttttttttgttttgtgattaaaaagtttaaactaaaactaaagtaCTTGATTGTATTGATACCACATCAATAAAGCCTTTCTTGTATACATGTTTTCTCCTTCAATGTTATTATCAGTTGCAGTAGTCTGCACGTGAGACCTTGCAGAGTATTGTTTTCTCAAaggattacaattacaattgtgttgatgatgttgatgatgaagATTATGTGTACATTTACATGCCATGTTATGGGTCCTACACACCTTAAATCACATGCAGGACATAATGCAGACTGGGGTTTCGTGGTCTTATTGACTGCTTCGAATTTCAAAGCAGGTGATGCTAGCACCTAACACTTGTCCACATGACGATACATGACACTGCTGCAGCTTTAAGCTCTATTTTTGTCCAGATCCCTAATTTGATATTTGTATGTGCTCAGTAAacaagtatgtgtgtatgctaTGTTAGATACTCGTCACACAATGTTAATTATCTATCTACGCATGCTGATGCCTTTGTTCACATAGAGACATTGTTAAGCTCCATGGTACCATACAGGTGTACTGGAGCAAGTGCATTAAACTGGCCATATCCCAGGTGTCTCTCAGAGTGGGACCACAAGGTCTCCAGTGCGCCCTTAAGTTCGTAACCAATTTTACAAATGATTAGCTGCATTTGTCACGGTTACCATCTTTCCCAGGCGTTTAGCaggtaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130328 True 4299 lncRNA 0.36 2 10555729 10617196

Neighbor

gene id symbol gene type direction distance location
AMCG00011091 trappc3,LOC107653823,LOC107564495 coding upstream 52263 10498477 ~ 10503466 (+)
AMCG00011090 csmd2 coding upstream 363488 10139461 ~ 10192241 (+)
AMCG00011088 csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197 coding upstream 468025 10073722 ~ 10087704 (+)
AMCG00011087 csmd2,LOC106957799,LOC103363662 coding upstream 536796 10018562 ~ 10018933 (+)
AMCG00011082 NA coding upstream 823286 9723810 ~ 9732443 (+)
AMCG00011094 tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508 coding downstream 23584 10640780 ~ 10651427 (+)
AMCG00011097 NA coding downstream 421860 11039056 ~ 11093828 (+)
AMCG00011096 NA coding downstream 476639 11093835 ~ 11124053 (+)
AMCG00011098 adgrb2 coding downstream 519520 11136716 ~ 11171971 (+)
AMCG00011099 adgrb2,LOC106931923,LOC107082735 coding downstream 602692 11219888 ~ 11252848 (+)
G104221 NA non-coding upstream 682839 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 808865 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 1074055 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 1079886 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 1203142 9352373 ~ 9352587 (+)
G104271 NA non-coding downstream 106354 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 755358 11372554 ~ 11377085 (+)
G104310 NA non-coding downstream 801470 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 915724 11532920 ~ 11593994 (+)
G104443 NA non-coding downstream 1227214 11844410 ~ 11844623 (+)
AMCG00011089 csmd2 other upstream 283866 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1006209 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2003124 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 3452221 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 3634798 6892397 ~ 6920931 (+)
G104273 NA other downstream 201492 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 1026821 11644017 ~ 11651021 (+)
G104382 NA other downstream 1049002 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 1191650 11808846 ~ 11810822 (+)
G104435 NA other downstream 1224933 11842129 ~ 11844089 (+)

Expression


Co-expression Network