G104307 (col9a2)


Basic Information

Item Value
gene id G104307
gene name col9a2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11372554 ~ 11377085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130396
GCTCCGCCCAGAACAGCCCTCTTTGCGCTCACCGCCACCGCCGCCAGCCTCTCCTGTATCATCTTCAGCACCACTTCAATGATGTGTTGGTCAGAAGTGTCTCTGCcAGGATTGCCCTGTCGTCCAGGCATCCCAGGCACACCCCTCTCGCCGTAGAGGCCCCTGGGGCCGGGCAGGCCTGGGGGGCCTTGCTCGCCTGGCTTCCCTGGGTCTCCTGTGGGGCCATTGTTCCCTGGATCTCCACGCACACCTTGctgGCCTTTAGGTCCGGGCTCTCCAGATGGTCCCTGctctcctttctctcccccAAGACCCTCTACACCGGGGTctccAAAGTCTCCCTTCGGTCCGACCTTTCCTTGGAATCCCTTGTCTCCCTTCACTCCAGGGATTCCCTGTGGTCCTGGGATTCCCACTGGCCCGCGCTCGCCTTTT

Function

symbol description
col9a2 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and skeletal system development. Predicted to be part of collagen trimer. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including axis; head; hypochord; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and osteochondrodysplasia. Orthologous to human COL9A2 (collagen type IX alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(IX) chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130396 True 435 lncRNA 0.63 7 11372554 11377085

Neighbor

gene id symbol gene type direction distance location
AMCG00011101 NA coding upstream 2857 11351902 ~ 11369697 (+)
AMCG00011100 NA coding upstream 25543 11303064 ~ 11347011 (+)
AMCG00011099 adgrb2,LOC106931923,LOC107082735 coding upstream 119706 11219888 ~ 11252848 (+)
AMCG00011098 adgrb2 coding upstream 200583 11136716 ~ 11171971 (+)
AMCG00011096 NA coding upstream 248501 11093835 ~ 11124053 (+)
AMCG00011102 NA coding downstream 22764 11399849 ~ 11412952 (+)
AMCG00011106 LOC106588897 coding downstream 95714 11472799 ~ 11490031 (+)
AMCG00011109 kcnq4 coding downstream 122480 11499565 ~ 11500270 (+)
AMCG00011107 NA coding downstream 150125 11527210 ~ 11530729 (+)
AMCG00011105 kcnq4 coding downstream 165903 11542988 ~ 11552978 (+)
G104271 NA non-coding upstream 648664 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 755358 10555729 ~ 10617196 (+)
G104221 NA non-coding upstream 1499664 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 1625690 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 1890880 9477567 ~ 9481674 (+)
G104310 NA non-coding downstream 41581 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 155835 11532920 ~ 11593994 (+)
G104443 NA non-coding downstream 467325 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 467601 11844686 ~ 11845805 (+)
G104445 NA non-coding downstream 468903 11845988 ~ 11846253 (+)
G104273 NA other upstream 553131 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1100691 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1823034 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2819949 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 4269046 7071433 ~ 7103508 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 266932 11644017 ~ 11651021 (+)
G104382 NA other downstream 289113 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 431761 11808846 ~ 11810822 (+)
G104435 NA other downstream 465044 11842129 ~ 11844089 (+)
G104550 NA other downstream 689409 12066494 ~ 12067337 (+)

Expression


Co-expression Network