G104319


Basic Information

Item Value
gene id G104319
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11420749 ~ 11426225 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130411
acacacacattttaagaaCAAAACTCTCTATACTGTGTTGTCAATGTAATTGAAACCAGAAAATCTACatttaggagaaaaaaaacattttcttttcatatttcatattcaataGGAAATGTGTCATGGTATATTTCAGATACACGTATTCTGGGTGTGGGAGACATCCACAGAAGGTTGgtagttgtgttgttgtgtacaGTCTGGTTCTCTTTTGAACAATGGATAATGGATGCTCTGGGGGCAAGAATGCATGCTCTGATTTCCACCAAGGTGTTGAGAACAAACtgcctaaaaatatataaaagagaaATTCAAACTGTTACCCATTGAAAACAAAGGACTATACACCTCTCAAACAAGACTTTACTAGAGCTAAAATTACTATGTAAATGGTTTACAAAAGATTTACAAGTTATCATTTTGCTGGCAAAACTAATTTGCCATCCAGTGGGGTCACATGGGTGCCAGAGGATTCTGTCCGGATCTTGGAAAATAAGGAGATTTTATTTCCGAATGTGCGGTATGGTTCCTGGCTATCCAGCTGACTTCAGTTCCTTTGGCTTTGTTTGTgagcacaacaacaaaaataggagaattaaataaatatatctgctttccattttcttatttattttgtaaatggtttatttatttatatggaaGCAAGCAAGTTACCACCTGTGGGACTGTAGGTTTTCTTGGCTATGTGTTTAGTGGAAACCTTTATTTCTTAAAGAACTATAAGCactataagagagagagagagataaagagagagagagaggctatTTGATGGTTTTAAGCTTTTGGTTGAAAGATTTAAATATCTCCTGTCTTTATTTTGGAGATTAACAAAGCAATTAAGGCCCATAAGACAATTCCTTTACTCGCTGTGCGGGTAAGGCTTACTCTAATGACCTGCACCATATAAATCTTTACCTTCTGCACAATTGCAGATGTATTGTTGTATTCATCACTGCAGTATCAGTTATCTTTGTTCTGTGAGTGAGGGACTCcagggagggggaaaaaactaatggactaaaaaactatttaagaGCCTGggtacttttattattatttgcacacTTCTAAACTAAaggcaaatatataaaatataaattatgccTTTGTGATCACTGATAGAAGTATGTACTGATAAAGtggacatttaatttatttaaaacaatggcaTTGTTTATTAAAGCTACATTTTTCATAGAAAGTATGTCTATCTATATAACCCTTAATACGTATTAATCTATGCTGTGAATGTTATTGTCCTTGATCTACattatgaaattaatattaGACATTAATAATTTTTTGAACTGTGTTACTTCTTGTGTGTGATCTCAAGGCTGTATGTACACGTGTTTTatatgtactgtactgaaagCAGCAACCGAGCATTAATGGTGATCAcaacactgtttaaaaaataggtatgcaaaatacacatacaaacactcAGTGCCAATCTGACTGTTTCAATTAAATAGGCCTacgcaaattattattattatttatctattccTTTAGCAGATTTTCACAGCATATGCCTGACTTTTGAAAGCTGGTCAAAAGAGGAACTAATTAGGGACGTTTGTATGTTCGTAAGAGTGACTTCATCTCACTCACAATGGCTGCAAAGAGCTCCCCTAAATAATCTTAATATTGGAAAAAAAGGGCAAATTATTCTAAACTGAATTCACACTGTTGGTCTCATTCTTGAGTAAATCATTAGACCACTGCAGAGAATCGGGTCCTGTCAGCGGCACTGAAAGATCTGCTTTGGCCGTCTCCTGTGTATGCCCTTGTGGAGATTTATCACGATAAATGTGCACGGTCACCAAGCAGTATCCCCCCCAAGGTTTTTCCCATGCATGTACTTTGTCTGGCCTGTGACTGTCCATGAATGTCCATGTGTCATGCTTTATTATAGCTTTACCAAggtttttactttactttccGACACTTGACTCTGGTTTTACCTTGGTTATAAACTGCTGCCAACGTGTTTATCATTGTGTTATCGAACCATGCTTGATTAGCATCCTTGTTACCGCTTTAAAAGACAATTTTAATTCCCAAGTCTCTCCTTTAACTGGCCGCTGGAGATGATCAAAGGCCACAAAAGTGAGTCATAATCAACAAGTCGCTGTGATAGAAAGTAGGAGCAGACATAGGCCAGTTTGCTACATTtccaatgttttgtgttttgtttttgtttgtcaggTTGAGTACCAAATTATTTACCCTGAATATCTGTACTGCATACAAACACTAACAAGCAGTTTGTTCATGATTGTTGTTGGACTATAGTATGTGAACTACCCAGCTGTTGAAATGGGGTTGCCTTTATTGCTATGCGTGTGGTCGAGTGCTGCTATGTTCTTACGAACACAGAGAGGTCTGAGAGGGACACTAGTGCACTGCTGGGTGGTCTGGCAGTGGAAGAGTTTCTTCCTCGTATTGAGAAAAACCTTCAGGGCTTTTCAGCTTGGACACGAATGTATTTCTTATTGGCCGAGGTCTTAATGAAAGAGATTTACAGGTATACCGTTTCCTTTCCTGCCAGAGGTGATGCCTCTTCTCACGCTATTAGATGTTGTTTAAACACTTTTTGCCAAACAGCATGACTTGATTGGAGAATGACAGGACTAGATTTGGACGGTTGCATTTTGGCTGGGCAGACATTATTCAATGTGGagcttattttttcttaattatttttttactagaGACAGGGAGAGCGGAGAGAGAgctattaaagttttttttttatatatatatatatatatatatatatataaagtagtAAAGGAGGAGCTGCAGAGCACAGAGGGCTTGTTTAGTTGTATGCCTTATatcatttgagaaaaaaagtggTTTGCTAAAGTGCCACAGAAGCATCgcttaatgttttaaacaaatgtatatttagtgtAGAATACATATTGTATTCAGATATAACTCTTTAAGATTTCTatgaatgtatttcttaaatgttttcacttgctgtatgttgcttttttctgaACTGCATTGCTACCAGAATCTTTTGAGAACATCTTTCTACAGgggctgtccttcctgtcttaCATGGACAGCAAGTCACTTGGGGGGGATTTCTACCCTGGTCTGACTACAgcagatttctttattttacagatggCTCCTCAGTGACACTAGGCAAAAACTAGAaacatagaaaaacagaaactttaaaatacagtccCTAAATAAACGCCTAACCCTTGTAAATGTCAACAAAAGAATTTAGTGCAAGGATCTATCTGGACTGAACTGCAGTAAAAACGCTCACACAGATGTGATGTTCTGATATGGAAATACTGCACACTTGCACAGGGGAGCTATAATCACATTCtgggaaattaaaaaagcattgtaagaaatataatttgcttTGTAGCATAAATATCGCCTTCCATATGTCACTGGCAATAAGTTCTTACCTGTCTGGGGTTCGGGGTGAGAAGAATTGTGCAGAGCACCCAGAGGGATCCTTGCAGTAAAGTCAATAGTTGTCTTGGTTTTCAACACGGGTCAGTGGAGCCTGTACGAGTCAGGACTCAGTGCTGGGGAGGCATGCTGATTTAGTTTCTGTTTGACATTcagtaaaaatgtatgttaaaaagTATTAATATGGAGTGTTTCTTAAGCAGGACAGTCCCCCCATGGCAACTAATGTACTTGGTAGGTTGAATTATGGATTTGAAtccacgcacacacgcacacacatataaacacagatCAGGGCTTTTCAATTTTGTTCCCAGGTACACATGAGCAGTCCAGTTGTCtgtttatgttcttcttattaaACTGGGAATTCTCAGGGGGAAACCATTGCAGACTTACAATGTGGCCGAAAGATCAACATGGGATCCTGGTCATACTGGGAACAGTGGAGTGCCACTGGTCTGAGCCTCTGAGAGCAGAGGAGAAGAAAGTATGAGTAGTGGAGCATGAACAAATTCAATCTTAGCTTTCGCGGCTCCGTTCTCCTCTCACAAATTACCTCATGAAGAATGTGAGCTTACcccaaacagacaaacattatatatgttAGATGTTACACCTACAATATTTGCACTACAGCCTCCACGACACAAGAGTAGGTCTGGTAGGCAAATAATGACAGAACATGCCGTTGGTGGGTCAGTCTGCTCTTGGTCAATGTTCCTGAGTACAGGGTTCTATCGTGCCTCTGTCgaggttttgtttctgttgttgtttttatcaccGGCATCATCattcttgttattgttgttgataGGGAACGTGGCTTTGGAAGAGCATTGCAGTTTGGCCCTAaggattaaataaatgtctttacGCTGTGTGGGACAAGAGCAATGAACAGCACAAAAACACCTTGCCGCATGGTTGTGAGAGAGCTGGTGCGAGGTTTGTGTGGCGTCGTGTTCTCAGTTGTGTGTGTAGAGCGTGGCGTGTCGGAAGACTATACTGGTGTCGATCTCAGGTCTGTTGCAAATATTCGAAgaacaaatgcatttataaacagTTAATCTGCCACAATCCACCAAACACAGAGAAACCAACATAAACTGTCCACGTATTCCTGGTTCTGTGGAGTGGGCAGTTTACTCATAGTTAGAAACTTGGACCCACTGTAGCACTACCAAGCTCAGggctgtgtttctgatgctttATCGAGTAATACACAATTCAAGAAATTTGAATCGGATTGCTTTCAACGCGCAGCAGAAGTATTTTCTGTGTGCCGCTGGTTTTGCAGGCCTGggagaaaacacaattatagCGCCACACACTGAGAACGCCACGGCCCCTCTCTCCACCTGGGAAGATAGACCGATCAGAGTTGTGGGGATTCTCTACTGCCACATGAACCGAAGCTCAGGGCACTATGCTTTGCCACTAGCTGTCAGCTTTACTTACTTCCCCTAGATGTTGGTTTTAGTCGGCTTACGGTACAGATACAgtatgaaaagggaaaaaataaaataaaaaaatgtaatagatgaaggatattttttatacatatatattataacttGCCTTGCCCACTTTTCTGTATccccaaattaaaacaaaataagtcgAGCTTCTAAGTGcaaatattgtactttttttgttgAAAGAGGGATATGcttaaacagaagaaaatgacaaaactgaaataattaaacaaaacagctgtaatTTTATACCTGtgctttgtaaatgttttctatgTGCGGTATTTGATAATGTGAATCTGGTATTTTTGTTCGTTTGTATGCTGCAGAACTCAATGACTTTAGGTGCACgcagttttgtaaaaaaataaaataaattataatattaaattgaacaaacaaaaaggctGAAAATTTTCACATCAAGCTTGTATCTGCATGCCCCTTGACAGCCAGACCAAGTCATTAAAATTCTATTCGACTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130411 True 5456 lncRNA 0.38 2 11420749 11426225

Neighbor

gene id symbol gene type direction distance location
AMCG00011103 NA coding downstream 25002 11369700 ~ 11395747 (-)
AMCG00011092 NA coding downstream 941601 10459562 ~ 10479148 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding downstream 1667259 9752696 ~ 9753490 (-)
AMCG00011083 NA coding downstream 1670850 9745248 ~ 9749899 (-)
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding downstream 1904453 9508584 ~ 9516296 (-)
AMCG00011104 NA coding upstream 5481 11431706 ~ 11434381 (-)
AMCG00011112 NA coding upstream 226777 11653002 ~ 11661299 (-)
AMCG00011114 NA coding upstream 238899 11665124 ~ 11694330 (-)
AMCG00011113 NA coding upstream 277864 11704089 ~ 11767942 (-)
AMCG00011119 NA coding upstream 374536 11800761 ~ 11805757 (-)
G104315 NA non-coding downstream 646 11416190 ~ 11420103 (-)
G104278 NA non-coding downstream 474475 10946001 ~ 10946274 (-)
G104272 NA non-coding downstream 696793 10723590 ~ 10723956 (-)
G104126 NA non-coding downstream 2007827 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 2155262 9237791 ~ 9265487 (-)
G104341 NA non-coding upstream 84998 11511223 ~ 11593619 (-)
G104342 NA non-coding upstream 160833 11587058 ~ 11594342 (-)
G104376 NA non-coding upstream 222780 11649005 ~ 11656833 (-)
G104449 NA non-coding upstream 237367 11663592 ~ 11697059 (-)
G104513 NA non-coding upstream 551126 11977351 ~ 11978288 (-)
AMCG00011086 NA other downstream 1676964 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 1801470 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2184521 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 2556698 8819551 ~ 8864051 (-)
G103832 NA other downstream 3393718 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 533013 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 564604 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 640270 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 899872 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 1001768 12427993 ~ 12457327 (-)

Expression


Co-expression Network