G104444


Basic Information

Item Value
gene id G104444
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11844686 ~ 11845805 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130571
CTGCTGTACTTGCCACCCCCAGTGCCCAAGGCTCCCCCGGCCAGCGTGTTGAACCTGGGCGTATCTCCCAGCCCCGCCCCGGCTACGCCCTCGCTGGGCGAGGTTGTGCTGAGGGCAGAGGTCACACCCTCCAGGCTGCTCTCCCCCAGACTGGGCCGCTTCAATGCACGCCATGCATCTGCCACTGagagaagagacagaaagagagagagagagggagagggagatggagagggggaAGGGTAAGAAAGAGAAGGGAatagggagagaaagagggcaaagagagaggggggagggagagatggggagggggagggatacaattaatagattaattgatatatatatagatatatagatatatagatatatatatacactttttttagGGTTTTAAGTCCCAGAGTAAAAACTATTTGAgacagtgagggagagggagaaacaccataagagggagagggagagtgacagtgagggaaagggagaaataCCATGAATGAGAGACGGCGGGTGTGTTCTTCAGATAGTTCAGTGAGGTCACAGAAGGGGGGTGGCACATGGCTCACCTGTGATTGGTCCGTCATCCTCATCAAAGTCGATCTTGACGCCGCGACCTTTGGCCCTGCTGACTCCGCAGCCCCCACCACGGCACAGCGACACGGGCACCACACCGTACACATACGCCAGCATAATAGGCACGCCGATCCCTGGCAACCAtaccacacaaaaacaacaacacaagtcaGTGCTGCAATGTAGAAGTAACACCACACAACAGTGAGGGTAGTAGCAGTACAGTATGCATACAGTAGCAGGTTAGTACTTGTACCGTAACAGTGTAGAAAGTTGAATAGGGTGGTATAGTAGACGTGCGGAAATAGTACAGTAGCAGGGCAGTACTGGTATAGTAACAGTGTGGTAATAGTAATAGCAGAGTAGCAACAGAACAGTCACATGGTAGCAGCAGTGTGGCATCAGTGCAGTGTGGCAGCGATGGCTCCTCACCCACGCTTACGGCAGCGATGACGGGTGCGGTTAGGATGGACAGGGCCACGCCCCCCGTGATGGCCAGGTTCCGCCGCGGCCTGGACACCTTCTTACTGTCATAGTGACTGTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130571 True 1120 lncRNA 0.53 1 11844686 11845805

Neighbor

gene id symbol gene type direction distance location
AMCG00011116 NA coding upstream 5657 11833844 ~ 11839029 (+)
AMCG00011111 NA coding upstream 202459 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 257480 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 291708 11542988 ~ 11552978 (+)
AMCG00011107 NA coding upstream 313957 11527210 ~ 11530729 (+)
AMCG00011122 NA coding downstream 97794 11943599 ~ 11946001 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 116593 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 141057 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 188492 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 199230 12045035 ~ 12050580 (+)
G104443 NA non-coding upstream 63 11844410 ~ 11844623 (+)
G104326 NA non-coding upstream 250692 11532920 ~ 11593994 (+)
G104310 NA non-coding upstream 424620 11418666 ~ 11420066 (+)
G104307 col9a2 non-coding upstream 467601 11372554 ~ 11377085 (+)
G104271 NA non-coding upstream 1120796 10723550 ~ 10723890 (+)
G104445 NA non-coding downstream 183 11845988 ~ 11846253 (+)
G104479 NA non-coding downstream 68689 11914494 ~ 11917031 (+)
G104480 NA non-coding downstream 71883 11917688 ~ 11918147 (+)
G104483 NA non-coding downstream 74069 11919874 ~ 11921197 (+)
G104488 NA non-coding downstream 83408 11929213 ~ 11930014 (+)
G104435 NA other upstream 597 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 33864 11808846 ~ 11810822 (+)
G104382 NA other upstream 173346 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 193665 11644017 ~ 11651021 (+)
G104273 NA other upstream 1025263 10818688 ~ 10819423 (+)
G104550 NA other downstream 220689 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 221646 12067451 ~ 12140465 (+)
G104694 NA other downstream 679555 12525360 ~ 12527031 (+)
G104719 NA other downstream 764324 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 824571 12670376 ~ 12679429 (+)

Expression


Co-expression Network