G104449


Basic Information

Item Value
gene id G104449
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11663592 ~ 11697059 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130580
aaaaaaacaggaaaaagcagaaacttatttattttgggagtATTGTATCACTGGCCAGAGTGCATTATAATAAATTtggatttttgttattattattattattattattattattattattattattattattattattgtatgattCTTTGTGAggatctctctcgctctcttgtTAGTGCGTCTCTTTCTGGATTGACGGGGgggcgagggagagggagagggtgaatGAGTTactgacagacagaaagagagcaGATTATGGAGCGGCAGAaaatagagagagtgagaaagagtgGCACATCAGCCCCAGTCTCCCTTTTTCCCCTCACCCCTCTCCCTCTACACTATACTGGGCCATCTGACTCACCTGATGCTACAGACTGGGTCCCCTGCACTATACTACAGCACTGAGTACAGGCAATCCAGTCTGGGCAAACCAGAGCTGAACTGACGTCTGGGTCAATtcgattttatttatttatcttctgaGCCGTGCCCCCTCACCTGAGCCTGCCTGACTGTCCTTTTggaagggagggggggcaggcAGTGTGTAGTTTGCTTCTTTTGTTCCTCGCTGGggaaggagagaagagaggatGTGCCGTCTGCTTGTGTTAGAGACTGGCAGGCACACTGGAGTAATGGTTGTCAGGGGACGATaaagattatgattattaaaaatgaataatggtaaataaaatggattttaaacaatctttttttctgttctctttttgtattaaaatatcgCTTGCAGTAAAAAACTACGAAA

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130580 True 778 lncRNA 0.42 2 11663592 11697059

Neighbor

gene id symbol gene type direction distance location
AMCG00011112 NA coding downstream 2293 11653002 ~ 11661299 (-)
AMCG00011104 NA coding downstream 229211 11431706 ~ 11434381 (-)
AMCG00011103 NA coding downstream 267845 11369700 ~ 11395747 (-)
AMCG00011092 NA coding downstream 1184444 10459562 ~ 10479148 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding downstream 1910102 9752696 ~ 9753490 (-)
AMCG00011113 NA coding upstream 7030 11704089 ~ 11767942 (-)
AMCG00011119 NA coding upstream 103702 11800761 ~ 11805757 (-)
AMCG00011118 NA coding upstream 142201 11839260 ~ 11853897 (-)
AMCG00011117 ak2,LOC106570014 coding upstream 158172 11855231 ~ 11860000 (-)
AMCG00011124 NA coding upstream 175545 11872604 ~ 11891098 (-)
G104376 NA non-coding downstream 6759 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 69250 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 69973 11511223 ~ 11593619 (-)
G104319 NA non-coding downstream 237367 11420749 ~ 11426225 (-)
G104315 NA non-coding downstream 243489 11416190 ~ 11420103 (-)
G104513 NA non-coding upstream 280292 11977351 ~ 11978288 (-)
G104545 NA non-coding upstream 342110 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 379669 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 438909 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 459383 12156442 ~ 12156731 (-)
AMCG00011086 NA other downstream 1919807 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2044313 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2427364 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 2799541 8819551 ~ 8864051 (-)
G103832 NA other downstream 3636561 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 262179 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 293770 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 369436 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 629038 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 730934 12427993 ~ 12457327 (-)

Expression


Co-expression Network