G104480


Basic Information

Item Value
gene id G104480
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11917688 ~ 11918147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130634
CCCGgttcaatcaatttttatttgtatagcgcccttcgcagggtagccacagagcgctttacagactggtaaacatacaacaaacgtatagcaaaataaaaaacataaattcaatcaaatcaaatatagacctgtaaacattttacatgatctacaataaagtgagtgaacatttaagtaaataaaccatttaggcacggaggagagaaaaacaaaaaactcctacatggatggCCGTCTCTTAGGGTTCTACGCAACGATGCGCATcgtattttttaaaagattaaaacgTACCAGTAAACTTAATTTCAGAGCGGCAATTCCGT

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU130634 True 326 lncRNA 0.36 2 11917688 11918147

Neighbor

gene id symbol gene type direction distance location
AMCG00011116 NA coding upstream 78659 11833844 ~ 11839029 (+)
AMCG00011111 NA coding upstream 275461 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 330482 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 364710 11542988 ~ 11552978 (+)
AMCG00011107 NA coding upstream 386959 11527210 ~ 11530729 (+)
AMCG00011122 NA coding downstream 25452 11943599 ~ 11946001 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 44251 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 68715 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 116150 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 126888 12045035 ~ 12050580 (+)
G104479 NA non-coding upstream 657 11914494 ~ 11917031 (+)
G104445 NA non-coding upstream 71435 11845988 ~ 11846253 (+)
G104444 NA non-coding upstream 71883 11844686 ~ 11845805 (+)
G104443 NA non-coding upstream 73065 11844410 ~ 11844623 (+)
G104326 NA non-coding upstream 323694 11532920 ~ 11593994 (+)
G104483 NA non-coding downstream 1727 11919874 ~ 11921197 (+)
G104488 NA non-coding downstream 11066 11929213 ~ 11930014 (+)
G104489 NA non-coding downstream 12061 11930208 ~ 11932286 (+)
G104477 NA non-coding downstream 30093 11948240 ~ 11949712 (+)
G104512 NA non-coding downstream 59089 11977236 ~ 11978365 (+)
G104435 NA other upstream 73599 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 106866 11808846 ~ 11810822 (+)
G104382 NA other upstream 246348 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 266667 11644017 ~ 11651021 (+)
G104273 NA other upstream 1098265 10818688 ~ 10819423 (+)
G104550 NA other downstream 148347 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 149304 12067451 ~ 12140465 (+)
G104694 NA other downstream 607213 12525360 ~ 12527031 (+)
G104719 NA other downstream 691982 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 752229 12670376 ~ 12679429 (+)

Expression


Co-expression Network