G104591


Basic Information

Item Value
gene id G104591
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12135968 ~ 12142015 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130781
AACACTAAAGGCAATGAAACTAaaagaatataataaaataaagacgtTAAAAAAGACCTGTTGGTACAACAGAGAGTCCTTGcgatgtacagagagagaaggaacaGTCTCCCAGCAGGGCCGCCGCACAGTGCCCCCTGCTCTGCCTCCCCCCTCGGAGACAGCACCTATAAACCACCAAGCCCAGAGGAGACAATACCAtgctttggtttattattattattattattattattattaataattggttctcctttatatttttaaatattttcaccaGTTGAGTGAAAGTCAGAGGCTTGATGACACAGGAGCCCATGTAGGCCACTCTGGCATGCTGAGCTCAAATGGTGCCCTGGGGCTGGGGCCGCAATGAGGGCAGGAGAGGTGGCTCTGGGACTCCAGGCTCCCTTCAGCAAGTCAGTCGCACTTCCTCGGTCAGTTATAAACCAAGGGCTGTGGGTAATAAACCAACATCAAAATATGGAACCAGATAAACAATGTCTGAGACAGAGACTCACAGGCCGTGAGAATGAGGCTTCACTACAGGTTGGCTCAGGGATACACAGGGACCAGGTCATCAAGTCGAACTGGAGTACCAGAGCAGACAGCCGTGTACCCTGGGCTGCTCTCACCCTGTTACTGCCTGGGTTGGGCTGGCTGGGTGCCAATGGGCAGTCAGAGACTCCagctgggggtggggtgggtgagCTGGAGGAACAGTAATCCAATTGCTCAGTCTGTGTGAGACTCTGAGCTGTGTGAGAAGCAGAGCCTCCTCTCTATAGATCAGCATTTCCAAGCCCAGTCTGCTCCAGCTGATCCCAGGGAGGGAACTGTTGGACAGTGAGGGGACAGCTCTATGCCTTTTATGTCAGTCAGTATGAAGGGAGCCTAGGACTAATAGATTAGGAATatcaaactaaataattataatattaataataaaatatgtagtcACATTTGGTGGGCCTGTTGATTTGGTTCAAACTGAGCTTGCAGCCCAAAGTCAGGCTCCCCCTCTGCGGTCAATGACAGGAGGACAGGTACCCATGAAATCCAGGAAGAGGAATATTAGGACAGTGCTCAAGACAACACTATCCTCATAATACAGGCACAGGTCTCAAAAGTATATAAATCCTAGCCACGAATTCTTAAGGAGTAAGAAAGCCAACCTCGGAGCCCTGGGACTGTGCTGGGCTTGGCAGTTAAAGGGTTAATTGTATACACAGACGGAGTCTAACGAGCTGGGTTAGTGGTTAGAGGAAGGGACAACCCCGCCGCGGGTCAGTGAACTCTCGGCCACCATTGCTCTGGTTATAACTCACAGACACTACAGGCTGAGGCTCACAATGGAGTGAGAGACTGGCgaccaacacaaacacagcccgAGCGTTCCACTGAGCCCTCCCCACTCCGCCAAACCCTGGTGGCGAAtctgcagcacacagacagacatttgcaataaatacacagagcagATCAAAACacgtgaaacaaaacaaaaataaaatatgacgACAAAATAAAGGCTCATCTTAGGACAAAATCCAAAGTCAGAAAAGTGTTAAGACAAGAGATCTTCTCATTATAATTCTAAAGTAGTTAAGTATATTTAATCAGGCATTATCAAGCGCATTATACTGTATCCAAAGCAATATTTACTGTTCATTATTCAGTACAATATGCAGCATACCAAGGTAACTGAGGTGCAGTGTTTCCAAATCTAGAGTATCCTTCAGGGACCTGGGGGCACTCCCCTGACACAGCATGTCTGGCACTGCTGCACAGGACCTTGTGTAGGCCAATGGAGTCTTTACCACCTACCACTTCCCTGCCTAAGCCTAAGTCTGCTCCACCCCGCTCACAGCCACACTGCTCTGCGCTGCAtgacctctctccctctctccctctcagtgcAGCAGTGCTGTGGTTCAGTGCTCAGGGCAGCTGTGTCAGGCGAGTTTCCGTCCAATCCCCCACCACTGTCCTCCAGAGTCTCTTGGTCCTAACTGCCGTGACAGAACTAACCCATACTGTCATTTCTTGGCATTTATTATTAGCACTatgttaatatacatatatatagatatagatgtatatacatataaatatatctatatctatatgtataggacatgtttctatgtgtgtgtgtttgtattcgCATGTATGCGTCTAAGTACAGGTAGGTATTTCGCCTTTCAACATTTGGaaaaatttgatttatattcaaGGTCTACAGCACCATCTTCAGGAAAGGCACTTTCTGTGGACGACTCTGCCCAGGCAAGCCCTCAGACACATTGTGCACATTGAGCGCTGAGTCCTGAGCCCCCCTGGACAGAGCCCTGGTCCTCCAGTCACTTCCTGGGCAGTTTCTGGGGCCCAGCTGATGGTGAAACTGTAGCACTGTGTCCTCCAAGTGGGCTCAGGGCTGGAGTTTCATCACCCACCCTCCCCCACTCCTGCAAAAGCAGCCACACGCAACCCCCATGTTACATTGTCCGCTGCACATGTACATGGCTCGTGCAAACACTTTGCCAAtgcccaccaccaccacctctccCCGAAACCCATGATCGACCGACCGGATATAGAAAGTAGAGAGCACAGCCCCACACAGCCCGGCCGGCTGAGCACCTCCCTCACCACACACAGGTCTGAGTAGCGCTGTCGAGGAGGGGCGGGGGTGGTGCAGACCCCCACCACCAGTCTCATTGAGGCTGTCAGAAACCCAGCCAGAGAGCTTCCCCTCCCACAGCCCACTTCTCTAAGGAGCAGCAGGGTGACCAGCCCAACCTTGTTGTGCACAGCCTAGAGACGAGCTCAGCACCGGCCGCACACACAGGCCCAGAATCGGGCCCCGAGATGGGCTCAGTGCCAGCCTCACACAAAGGCCCAGAACCAGGCCCAGACAAGCTCTGCAGGACAGAGCCAGAGAGTGACATGGGGCTCAGTATGCCCACACCCAGCACCACAGGAACACACCGGGCCACACAGCTCCCTCTGCCACCAGCAACACACATATCTCTACTCCcaccaaaacattaaaacagtctattgcattatttaaattttatattattttagatcTGTTAGCAAAAATAAGTGGTGTGCattacattatgtaaaatatacaaatatactcCACTCTGGTTAAAAAGGCTTTCTACAGTCCACTACAATGAGAGGTCTGCTCAGCTGTTCCAGTTCAACGGCCCCGCCCCTGGGGCAGTCTGGGAAAGCAGTCCCGCCCCTTGTTGCCAAAACAACCTATCCTGTCACGAACTTCGCAGCCAGTTCTGGTCAGCGCTGTGCAGTAGGGAGTGGAGTGATTCCCTGTACCTTAAGAAAGATTCTCACTGGCATCTTATCTCTAATATAACGttaaacccccccaccccccaaccccatgAGGTCTGCCTTCTGTTTAACAGAAGAGGTGCACCACCCTTGTGCAGAGGctcctcccatctctctctctctctctacctccttctctgcctccctctgccAGGGACAGGGCGCCCACACCTCGTAGCACCAGGCCTGTGTTTAGTCTGACACTCACTTCTTTTAGTGCAGCACATTGTTTCACTCTTGTGTTCTGTATACATGAACacgtgtatatatgtatgtatatgtcgatatatgtatatgtgtatacgTAATAGCAGCTAAATCAGTTTCTCGTGGCTGTGCAGAATGCCTCTGTTATCCAACAGGAGAAGCGCTgtctcacagacacagacacagcaccATACACAGCACCATACACACAACCATGcactcacacattcacacacacacactgctggtGTCAGAGAAGCAGAGAGTCAGAGTGTCAGAGAATGTGAAGAGTGAGAGGCAGGGTGGCAGGGCTGGACAGGCACAATGCCCTTctgcaaacataaaaaaataactctgCAGTATGATGTTCAGTCAGTGCAAAttgaacacaattaaaaaataaatcaaataaaatcaaaaagagCTCTGCCTTCCTGTCGCTGGCTCGGCCCAGCTAATAATCTGCACGATCTGTTCTGAAGGTCTTTTTCACAttcatgacaaaaaaaagatagaaagaGAATACATACAGAGAGGTCCCCCAGCCCTACTGTTGCCTCTGCTCGGGTTCAAATACCTCAGATTCTCATAAGGGGAGGAAGAGACGTCCCTTCACCCTTGACACCCCTGCTCTCTGCCCCACCAGGCACTCATCAATCTCTCAGCATAGGCACAACAGCAAGGCCCCCACAGCGCTGCTGATACACCCGGTCCTGCACTGTGCTTCCCTTCCTAACCCTGTCTGCACATACACTCCCCCCAAGGAGAAACATCCACAGCCAATCAGGGCTCACATGCTGACAGAGACACCCAATGAGAGCACAGCCTGCAGGGCGTGGCTCCTGCTTAATGTCTTATTGCACTAAAGGATAGCAACACCATGACCTGTCAGTTTTCAGCAGGCAGCGCCGCCACCGCAACCACACTCTCACACAGCAACAGGAACTACAACTAACAGAGACGCAGCACTTCTGTCTCCactaatattaaattaattaggctTAATTACTCtaataaataggaaaaaaaactagggaaacaaaactattaaaataaaataaaaacaagaaaggctaaaatgtcaaacatttaaaaacaaaacaatcacattgCAGAGTTCTGAAGGAAAGCTTGCAGGCCACAGGCAGCCCAAGCCCAGCGGCACCAGCCCCTCCTGCCTGGGAGGCACCTGGGAGGCCTGCTTAAGATTCTCCAGTCTTGCATTCCCAATGCAGAAAGGCTTCGGTGGCTATTGAAGAGCACTTTCACCTTGTTGCCTGTGGGTGGCACTGTGCTCACAATAATGATAATTCTTGTGGAATTGAAGAGTGCAGAATGCAGCTTCACTGACACTCTCAGGGTAATAAGTCACCATTGGCTACAAAACCGGACGGAAAAGAACAATGAAACTGGTGTTTGGGGCTGGGGGGGCAGACTGagcagagtccacacacacattgatatacactcacacacgatcacacacacatacacacatatgtatgtgcgcacacacatacacaatcacacaccctttaaaacacacactgtcaaGCACTCTCACAGTGAGGCTGTGGGGATCCAGTTGCTGGTGGCCAAACAATGCCAGCCAGAGCTCCCTGTCTGATGAGGAATTTACAGAGCTGCAGCCACACTGACACGGCACAGAGAACTCCACTCAGCCCTCCCCCGGCCCTGCCAACGCATCCACAACACAAGCGTGTTTCATTCTTCTTTCATTTTccgctttgttttttttcatctttgaaaagataaattaaaagtGCTGCCGTAACACGGGAGGTAAAGGCCTCgtagggacagagacagacagagagacagacagggggCAGGGGAGGGCTGTATGCGGCTGGCTGGTTTCGTATTGCATAAGAGTGCCATGTTCCTTGTCAAAAGCAGCAGCGCATCCTGTGGCCAGCCCAGGGGCCCTTCCATCTGCACAGTGTCGGTACGGATTCGTGGGAAGGTGCACCCCTTAAACTGATCCCCTGGGAAACGCAGGCTGTGTGTGGCTGAGGAAGGGGTCTTTCAGGCGAAGTACATGGTGCGCAGGGTGTCATGGTGAATCTGCACGGCCTTGGCCAGGGCCTGGGGGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130781 True 5693 lncRNA 0.49 2 12135968 12142015

Neighbor

gene id symbol gene type direction distance location
AMCG00011136 NA coding downstream 50540 12071667 ~ 12085428 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding downstream 76343 12053638 ~ 12059625 (-)
AMCG00011137 LOC107589451,LOC104962793 coding downstream 102569 12015153 ~ 12033399 (-)
AMCG00011138 NA coding downstream 127015 12004096 ~ 12008953 (-)
AMCG00011129 NA coding downstream 151160 11978953 ~ 11984808 (-)
AMCG00011150 NA coding upstream 123492 12265507 ~ 12275549 (-)
AMCG00011149 NA coding upstream 158770 12300785 ~ 12306207 (-)
AMCG00011151 NA coding upstream 246248 12388263 ~ 12402070 (-)
AMCG00011159 NA coding upstream 355332 12497347 ~ 12499099 (-)
AMCG00011154 NA coding upstream 363799 12505814 ~ 12507945 (-)
G104545 NA non-coding downstream 96592 12039169 ~ 12039376 (-)
G104513 NA non-coding downstream 157680 11977351 ~ 11978288 (-)
G104449 NA non-coding downstream 438909 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 479135 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 541626 11587058 ~ 11594342 (-)
G104598 NA non-coding upstream 14427 12156442 ~ 12156731 (-)
G104660 NA non-coding upstream 233052 12375067 ~ 12379667 (-)
G104665 NA non-coding upstream 260349 12402364 ~ 12402564 (-)
G104680 NA non-coding upstream 287950 12429965 ~ 12493101 (-)
G104697 NA non-coding upstream 381822 12523837 ~ 12524358 (-)
AMCG00011135 NA other downstream 66889 12066495 ~ 12069079 (-)
AMCG00011140 NA other downstream 138182 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 164966 11959238 ~ 11971002 (-)
AMCG00011086 NA other downstream 2392183 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2516689 9601377 ~ 9619279 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 184082 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 285978 12427993 ~ 12457327 (-)
G104715 NA other upstream 406274 12548289 ~ 12548993 (-)
G104749 NA other upstream 492841 12634856 ~ 12640227 (-)
AMCG00011169 NA other upstream 679010 12821025 ~ 12826880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G82053 NA non-coding CM030129.1 CM030129.1 37451121 ~ 37455288 (+)