G104660


Basic Information

Item Value
gene id G104660
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12375067 ~ 12379667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130874
ctcgatttaaaaaaaacaacaaaaaaaacctgcatgtactcattttattaattgagaTTAGAGTTACTAATTGACGTAATCAACTCATTTTAAAGAGCCAGtcaattgtatatatacaatgcATCTTGTATGAAACACCACAGGATTGGAAAATGAAGCCCACTACTGGCTCAGGATGAGATGAGATTGCATCTTCCATTTTGATAGTGACACACACAACTTCCTCAACACAAAACAGTACAACTCTGGTCTTTTTTTAGAATTTATTTTGGCAGAAACAGAAGAATGTTAAAACACTGGACTGGTAAAATTCTCTCCGGTCACCATTACACTCACTCCCTGTCCCTCACAGCAGCACTGGACATGCGAGCTgagcaggaggaggagtgggGATTGCCCCACCCCCTTCTCTGGCACGGATTGAGATTTAGGACTgaggaccccccccccacccaaaacaAGGACGCGAGTTTACAGTtgagtaaaattaaacaatttataaaaaaaggaCCAAAAACAAAGGGCAGCAACTTCAGCGAGGTCATTTCCTGTCCTTCACGGTCTGTCTCCACTGCCACAGCTCCGCAATCatCTTCTTGTCGTCCACTTTGAATCCATTCTTCACGTAGTTCTCAAATTTGCCTTCAATCTTGGGCAGCATTACACCCTTCTCTAGACTGGCCAACATCCTGGTCTTGATCTCGGCCGTTGTGGGGGGGGCACGGGGGGTCTGTGGCTTCTTGCTACTGCCTTTGTTGTCGGGGGTCTTGGCGGCCTGCTGGGGGGTCTTGGCGGCCTGCTGGGGGGTCTTGGCGGCCTGCTGGGGGGTAGAGCAGTCAATGAGTGCGAGTGTGGTAGAAGCACAGTGGCAGTGCGAGTGGGGTGGCAGCGTGGGCTTACCTTGCCCTGTCCCTTGCCAGTAGGCGTGGCACTCAGCATCTTCCCATTCTGTTTGGGAGTCTTCTTAGGCTGGGCAAGAGCGGGGTTAGTGCGTACCACCTTCACTGGcgtctcttcctcctcttcactCTCATCCTCTTCgtcatcatcatcctcatcatccTCATCATCATCGtcgtcatcctcctcctcctcctccatcttcATCTTTTTCTTGGGCTTTGATGCTCTGGGGTGCAGCTGGTCTCTTGCCAGTGGTCCTGggcacctcctcctcctcctcttcatcatcctcctcctcctcctcaaatGATGCATCCTCATCAGACATGAGGTGCTGTCCACTGATGTGCACAGGCCCTGCTCCTGCCTTGAGGCGGAACACAACGGGGGGGGTGATCTCGAATCCGCCCAGAGACACCTGCaattcaacacaacaTCTTTCACAGTGCTGTCCAAGCACACCTGTGGGGGGGgcgggcagagagagagagcataatTTAACAACTCTACACACAGGTGAATAAACACCAACACAAAGAGGGACAGACACATCCACAGGGGATCAGATGCACACACATCCCAACACAGGGGACAGACAGATTCAAGAGTACAAACTCACCATCCTGAGGGACAGCTGGTGCTCAAACTCATCGTCCTCTGGATTGAACACCACCTCCTTCCCCGCCTTCAGCTCACAACCTGTGAAACAGCAGAGTTGAGCCGCAGAGTCCAGCCGCGCAGCGAACACGGCACAGCTCGTTGCCATGGTATTCGAACTCGAGCGCGGAGAGACCCGGAAGCACGTGGAGATCATGTGCGCGGGGGGGTATCAGGGGGGGCTCCTTCTCTCCCCACGTCGCTACAGAGTAACCGTACACCGACACCAATCACAGCCCATCGGGCTAACCAAGAATAAAACCTATACGATGTCGCTGGAATGAGCGTCGCTCCGACAGCCATACCTCCACATTATTCCAAATAAATGCTGTttctattttcagtttaatgtatgattcaatgtattgatttattccaAAAACGGAGCGATACATTTTCGTTCGCTTCGAGTAAGGACAAACATGTGGCCTGTATACTGCGCTCGCTGGAGGTGGGAGAGATGGTGAACATACACCgaagtaaaagtaaattataagcATGCACATGATGTGACGAGGTCTATATAAACATCCAAGCTGGAAAACGCGGACTGTAGGGCTGCGCTGCGCCGACGAGACGCCGACACCACCGGCAGCGTGCAGCGCTGGGAGCACGCACGGCCGCCATCTTGCCTGCGCCGCACTGGCACACACGTGTTGGAGTCTCGCCGTGTGCCGAGTCCGGGGCCTCGGGCCTGCTGCTGTGGCCGCCGTACAACACGCCGGCTGTCCGGGCTGCACGACCGCGGGCAAACCGCGCAACACGGCGGGTCTGGGTCGCACGTGTTTTCACAGGAAAGTTCCTCTCCAGGAACCAGCCCAAGCCGcgcagcgagagagagggatagagagagagagagaggggggatagagtggagagagagagagagagagagagagagagagagagagagagagaggggggataGAGTGGAGAGAGAGCTGAACTGGATAAACTTGTGCATCACGTGGATGTACTAGTTTAGATAGAGAGTTGAACTGTCTaaactctctctgtctctgtctgtctctccagaCGCGCTCCACTCGGTAACTGTAAACTCGCGAATATTATAGCAATAATAAGCAAGGGCTTCacgtatttaaaaataaaagcggGTGTCCCTCACCATAAAGGAAGTTCTGTGGTCCCATCTGTTCCATGTCCATGCTGCTGTCCATGTTTCTGCCGAGTAGATCGAACTGAGCCGAGCTTCCCGGTGCTCGTAAAGAACTACACGCACAGCCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130874 True 2810 lncRNA 0.52 7 12375067 12379667

Neighbor

gene id symbol gene type direction distance location
AMCG00011149 NA coding downstream 68860 12300785 ~ 12306207 (-)
AMCG00011150 NA coding downstream 99518 12265507 ~ 12275549 (-)
AMCG00011136 NA coding downstream 289639 12071667 ~ 12085428 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding downstream 315442 12053638 ~ 12059625 (-)
AMCG00011137 LOC107589451,LOC104962793 coding downstream 341668 12015153 ~ 12033399 (-)
AMCG00011151 NA coding upstream 8596 12388263 ~ 12402070 (-)
AMCG00011159 NA coding upstream 117680 12497347 ~ 12499099 (-)
AMCG00011154 NA coding upstream 126147 12505814 ~ 12507945 (-)
AMCG00011157 nhp2,LOC107673822,LOC107590037,LOC107684699,LOC107715316,LOC106603897 coding upstream 131157 12510824 ~ 12527131 (-)
AMCG00011156 NA coding upstream 150163 12529830 ~ 12541377 (-)
G104598 NA non-coding downstream 218336 12156442 ~ 12156731 (-)
G104568 NA non-coding downstream 230945 12076728 ~ 12144122 (-)
G104591 NA non-coding downstream 233052 12135968 ~ 12142015 (-)
G104545 NA non-coding downstream 335691 12039169 ~ 12039376 (-)
G104513 NA non-coding downstream 396779 11977351 ~ 11978288 (-)
G104665 NA non-coding upstream 22697 12402364 ~ 12402564 (-)
G104680 NA non-coding upstream 50298 12429965 ~ 12493101 (-)
G104697 NA non-coding upstream 144170 12523837 ~ 12524358 (-)
G104776 NA non-coding upstream 381378 12761045 ~ 12763667 (-)
G104845 NA non-coding upstream 549005 12928672 ~ 12931083 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 46785 12326097 ~ 12328282 (-)
AMCG00011135 NA other downstream 305988 12066495 ~ 12069079 (-)
AMCG00011140 NA other downstream 377281 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 404065 11959238 ~ 11971002 (-)
AMCG00011086 NA other downstream 2631282 9741133 ~ 9743785 (-)
AMCG00011152 kcnip1 other upstream 48326 12427993 ~ 12457327 (-)
G104715 NA other upstream 168622 12548289 ~ 12548993 (-)
G104749 NA other upstream 255189 12634856 ~ 12640227 (-)
AMCG00011169 NA other upstream 441358 12821025 ~ 12826880 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 562723 12942390 ~ 12956267 (-)

Expression


Co-expression Network