G104845


Basic Information

Item Value
gene id G104845
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12928672 ~ 12931083 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131116
ttcACTCTCATACAAGTCTGAGCCCTCGTCTGTGTGCAAGTGGAGATCATTGCAGCACCATCTATAGGAAGCAAGGCTGAAACTCCACTTACAgtcttttgattttcttttggataaactgaaaaaaagtgGGGGTCGTGACCTGAAGGAAGTTATCTATGCAATTGTGTGAGAGGCTCCACAGTGCTCTTTGGAGAGATTTCTTGAATCCCCTTCTCGATCTGTACCACAGATCCGGAGCACAGGCCTCGCCCCCCCGGGGCAGCTGGACatctctggctctctctctttccagaaAGAGTggccattttgtttgttttgttcatgttgGAAAGACTGTGCAcaagcaaaaaactaaatgcaaatcaATCACAAATGCATAATCATAGCCTTGTCTTTGGAGCCCTGGAGCCTGGGGGTTTCGTCTTCTATCGTGGCAGGATCATTGTGGGAAGTTGGATCTGAAAATGGTGATAAAACTCTCTCCTGAGGCTATCCATTGGGAAGTGCTCCAGTTACTATTACACCACTAAAAACCCACCGCAGAATCAAGCAAGAACATTTTAACCCGGGGGAAGAGAGACAATTCTACGCCTGGAAGTCCAGGAGAAGATTCCCTTCCCTTGCAGAGAGACAGGCCTGTCCTGGGGAGCGCTCGGGTACTCCAAGGaacataataatactactaataatgatgCCTTGACTCACTTAACTGAGCATTGTTTGCTGTGCTCTCATGTTTGTGAAGTTTGTTACCTGTGCCAGCtgttgaaatgcttttattaatttCGATTTCGCTCTCCTGCAAGTTTGAATTGAGGCAGGGGGACAGGAGGGTTTGTGACACAGTTCTTAAATCTCAAGACTGGACTGGAGAGTGTGCCTGTTGTAGGTTCAGACCAGTCTCTGAACTGGTGTGGTCAGGCTCAATGTGAGTCACTGAATGTCTCTCACCATTGCCACCCGTTACTGGCCTGTGCAGGGGCTTGGGAAACCAGGGAAAAGGTCCAAGTCCTTCAAGACAGGGCAGTATCTATCCTTTATTAGCAACCCTATtgatactattattattattattattattattattattattattattattatttagtgaaGTGTGGAATTCCAACCATTGTTTACGACACTGCTGGCATTCCGTTTGGTCTCATTGAAATGAAGTGTTAGGaggtcatgtttttgttttctttattattttactgcagCCTGGAATCCTTTAAGCTATTCTGAATTCTAGAACACTTTCTCTGTGTAGCTATAGTAACAGATGTCAAATGGCaatcgttatttatttattttctctccaatTGTTATTTTCACAGCAGCAGAAAGGTTACAATGACACGGCCGTAACTGTTCTTCTTTAGGTTATGTGGCGTTTCTGGGCTGTGTGGCGGAGCTCGTTTCAGATGCCGAATTTAGAGTGCAATTCGAAAGATGTAATGGGAAACCAAATCTAATTTTAAGgtatatatctgtatgtgtgcgtgtgtctatTTATGGAGTTACTGCAGAAAAAAACTCTTCTGTGAACAGTTGCCGAGGCCCCTGAGGAAAGACAGCCTGCGTCCTGAACCGGCTGCTTTCGGAACTGAAGTAAGATCATGCGCACCTTCATTTTGAAACGGAACTTGCCAACGTAAAGGTCCTGACTCATCCCTCGCCACGCTGGCTGTCCATGTGGCGTCCACGGCATCCTTCCTCTCCCGGGGCTCTCCAACCCTGCAGGCCACACTGACCTCCCAGTTACTCAACTTGTTGGATCAGCTTATTAATCGCATTTATTTGATACTTCTGTATTTGACTACAGTCTCTGATCTACTACAGCTAGTAGGAGTGATTATCGCTCCACAAGTTTCCATTATCCATTTCTTTTCCAggtgagactgtgtgtgtgtgatgttgtaGGTACATTGATGCAATGTAGAgattttcttagtttttctctctcaatgccaacttgttaaaaaaaaggccTTAAACCTATTTGATAGATGTCTAATGGATAAAAGAACCAGATCAATGAAGTAATTGACTGCCCACCCCAACTGCCCCGGAGCAGAGCACTTGCATCGATTGTGCTGGACAgggctttctttctttaaatgttgaaatgtaaagtttgtcagggatattttataatgtagAATTGACAGTactgtattgctttttattattgtattattcgtgttattattatttcccttgGGCTTCAGTTGCTTAATATTTAAGCTGCAAATCAAACCTTGAGATTCATCCGCACCTTGATGTGAtgctgtcatttgtttttgctttggcTCTTTTCAATTTGTGAAGTTTaatatacaggaaaaaaaaaatctacaccTGAACATAAGACCCGTGCTTCATCTTCTGAGTTTCTAAGAATGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131116 True 2412 lncRNA 0.42 1 12928672 12931083

Neighbor

gene id symbol gene type direction distance location
AMCG00011170 NA coding downstream 109328 12815427 ~ 12819344 (-)
AMCG00011167 NA coding downstream 323028 12596134 ~ 12605644 (-)
AMCG00011166 NA coding downstream 333259 12582105 ~ 12595413 (-)
AMCG00011155 cdc23,LOC107692994,LOC106603039 coding downstream 372029 12551208 ~ 12556643 (-)
AMCG00011156 NA coding downstream 387295 12529830 ~ 12541377 (-)
AMCG00011173 NA coding upstream 35454 12966537 ~ 12984196 (-)
AMCG00011175 NA coding upstream 54302 12985385 ~ 12986581 (-)
AMCG00011178 slu7,LOC107741361,LOC107550887,LOC107756482,LOC107680665,LOC107676532,LOC107601502 coding upstream 57566 12988649 ~ 12999288 (-)
AMCG00011180 NA coding upstream 73455 13004538 ~ 13013351 (-)
AMCG00011179 NA coding upstream 88823 13019906 ~ 13034119 (-)
G104776 NA non-coding downstream 165005 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 404314 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 435571 12429965 ~ 12493101 (-)
G104665 NA non-coding downstream 526108 12402364 ~ 12402564 (-)
G104660 NA non-coding downstream 549005 12375067 ~ 12379667 (-)
G104846 NA non-coding upstream 4399 12935482 ~ 12940160 (-)
G104915 NA non-coding upstream 445050 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 446974 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 622357 13553440 ~ 13555074 (-)
G104928 clint1a,LOC108441628 non-coding upstream 731103 13662186 ~ 13667716 (-)
AMCG00011169 NA other downstream 101792 12821025 ~ 12826880 (-)
G104749 NA other downstream 288445 12634856 ~ 12640227 (-)
G104715 NA other downstream 379679 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 471345 12427993 ~ 12457327 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 600390 12326097 ~ 12328282 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 11307 12942390 ~ 12956267 (-)
G104909 NA other upstream 434000 13365083 ~ 13367074 (-)
G104929 NA other upstream 734712 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 1062900 13993983 ~ 13996589 (-)
G105050 NA other upstream 1136132 14067215 ~ 14068561 (-)

Expression


Co-expression Network