G104846


Basic Information

Item Value
gene id G104846
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12935482 ~ 12940160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131117
ttttcttcatccAAATGCATGTAGAAAGTAAGCAGGCCTGTGTGGTTCACTCCTGTCATTACCCCCTTGTAAGGATTGGGAAGGATCAGTGTACCTAGTAGTGCTCATTGGATTCCTTTCTTCAGCAGTGGGTGGAGAAGGAATGAGCCGCAGGGACGCTATTGGATTGGGGCTCTCTGGGACCACTGCTGCAAGACATGGGCgtggaagggagagagagagatagagggagtgtgtgtgtatgggaaGGTGCGGTGGAGGGTTCAGGAGGTCAGGGTCACTGCTGCCCCTCGCACTGGTTAAGGGCACAAGCAGAAAAGCTCTGGAGTTCACAGACAGCCCAGCTCAATTACATGGAAAGGTCACAGTGCCTCTCACTTGGCCATGTGTGAGCCCTTACCTATAGACTTTAGTAGTGGTAGTGTggtaatgtgtgtttattttttatgggcTGTTTTCAAAAGCTGGCTGGCCTTGTCTGTAAAATTAATGGCTAACAGAGCTGTGAGAGTGGCAGCGCTTTGACCTTCAATGGCTCAGAACTTGAAATGCTGAAGAGGGTTTGATGGCATAGTGCCGATTCTGCTGGCAATGTCACCGTAGCTCTATACTTGAGTAACTCAAGTGGTAGTTTGTGAATGATCGGTGAAAATGCGACCAAATGTATCCTGTAAACATCAGGGCGCAGGTTCCAGCGTATGCATTGGGTCTGTGCATGTGGTGACCAGGATGTGTGAACTGTGGGAAATGCCTGCAAGAATACCTGGCTTGTGAACACACCTGACTTTTGACCGTTCAGCCCCAGCACcaagcaataataaaaatgatgatgTGAATTAAAGTTGGGCATACACTATGAGATGTGCAGACACAGGAAGTTGCTGACGGCTTAGCGTTCTTCTCTGGGTCAGCAATTCTcccaccacccctccccccactgACTGTTGACATTTTTGCACCGGACAATTGAAGTGCAGAGTTTATGACACTAATGTATTTAGTCCATTCTGCTCACCCCccaccttttttatttatttattcttattcccCAGTGTGTAGCATTGAGCTGTGATTAGTCAGAAGGGGGGGTGGTTTGGGGTGACAAGTAATGTGCTTTATGAAATAATTGCGTAGTTTGTCCATGCTGCGTGGTAAAGCCGGCACACAGAACAGATCCCCTAATGCAGTTCCGCCTCGCCCTTCTGGAGATTTCGGCATTGAGAGCAGTTTGTTAGCATTAGTAACAGAACACCCTGAGATGACGACCGAGATCTGAAATCAACAATAGGAGGGAGAAGCACTAGTCTGTGATTGATGAAAACCACACTGCGGgatgtgtgggggggtgtgctCTTCAATTAGGCATGTCTTGTGATGTATTCAACTAAGTAGCGATTGAAGTCCCGACTTATTGTCCATTCTAGGCACAAAACAGCAGCATCACCAATGCCAAAGATCCAGGAGGAGGGTTGCTGGTGGGTTGGTTGCACTGTTGGCAAAAGCAGGGCCAAAGAAAGGTTAGCAACTCTGTAGAGGAGATTAGAGTGAGTCTGGGTAGCTGGGGTATAAGACTTTTTGTTGATCAGTGCATGGCAGGCAGCCACCACCACTGCCAGGGTCACACAGCATGGGCAGTAGGCTTTGGGTACCCATGGTCCTCAGGAGTGTAATCTCACTCCCAACTCGCTTTTTGTTATTCCTTCTTTCTCAGCCCATCTTCGTCCTCTACTCCCATGCCCTACATTCCTAAcctgttctttcttttgtccTACCCCAGCTTGCTTCTTGCCATCAATGTCTGTCTAAATCTCTGCTTCCCCTCCCAGTTTGTTGCAGCGTATTTCCTTTGCGTAGTGGCATGTTTTTATACCAGACTCAAatctatgatttattttactttgttttggttACTTCATCTACATTATACAGAAGCGTATCGAtgcaataaaaccaaacaaagagTGTCCAAGTGAGAGTTCCCGAGAATTTGACCTCTTTAGAATTTTCCCTATGAAGTCATCCAGattctttttttatgtgtgaAGGATCCCAGAGTGTCAGCGTGGCAGGGTGGTTCATCCCAGACTCGCCTGGCTCCTATTGGTGGTCCTAAATGCCTAGAGTCTTGATCTCTGCTATATGTGACTGTTAAAAGCATTTGACAAAAAGGAGAGGGGGTGCATCGCTGTTTTCATCCAGAGAGCTGCAGGCCAGCCTGCTACAGGAGGCCATTGTGAAAATAACTAATAGTAATTATGTGGCTTCGTACCCTAGTGCAGTCGCACACTACAGATATCCTGAGTTTTAAGGCCCGTTTGAAAGCCTGCCCCAGACCTGACTGTGCAGAGGGCCGGTGCCGTTAAAGAAAAACTTAACTTGAACTCTAAAGAGATGTGAGCCTTAGCTGATGTGGACTGGCCACAGAGGCTCTGCACAGCCCTGCATGTTGACAGTTGCCACAGTAGCTCTTGGCTCTGCTCAGAGCCCACTCACTCGCAGTGAAGTCACAGTAACAACTCCAgaagactttttcttttttcttcaagaGCTGGAGGAGTGCAGTTTCCATTCCAGTTCCAGTATCGGTACAGTTTCATGTAGAAAGCAAATGATTGTCCTTTCACTTTTGagtcatcatttaaaaaatatatatatttagactgtgttcactttttccttttctttgtcaCTCTGCTATAGCCAGGTTTAGTTATCATTTCTATGTCAGATACTGCAgttgtgaaatatgaataatgataattataatcttTTAGCTGTTGTTTTTACAGGCTTATGTGCTCTTGATGAGTGGGTCTTAATGACAAGAGAATCTGCAGGGGAGCCTGATGGGAGTGTTTTGAGGCGATTtagtgttgttttaaataaatgcaaactcTACCCTTAACTTTGACTGGAATATCCTGCAGTGCATGTTGCCTTGGTGAATAAACGGGCCTTTGGTGTTTTCCTAAATCTTCACAGAAAAGCCCCACACACAGTATAAAGGGCGTTTGGTTTTCTCAGGGCCCTTTCTGACAGTCTGAGCAGTGAAGATCGGTGACAGTGTGCAGTTCAGGTGAAATCCACAGTTGTGCTCATATGCAACATTGGGGCAGGACTGTGTGCCTGTGGAGGCAGAGCTTTGTCATGGGGTGTTAGCGCATGCCGAGCGCTTGGCAGCACATGTTCGTTGTCAGATCTGTACATGGAGGGCTGTGCAGCGTGGTCTTAGTCAGGTCCAGATTTCTCATGCATGCTGCAGGCAAGTGCAGGTACAGTGGCCTCTTCTGCTGGACGCATGCCCAGGGccattttgctttttgtatttgtttctgactGATAtgcaagacaaaaatataaattaataatgaacagCGTTGTTCAAACATGTTGATATAAAATGCATATGGAGCAGACTGGTTTACCTTAGCAGTTAGGAAGTGGTCATGTCAATGTCTGTGAACTCCTGTTAAGGCGAATGTACGTTTCACTAGTTAGTGGGAGTTAGATGTGAGCACAGTTGACGTGGTGAGGGACGGACAGATGGCCACGGCTGGAAGGCTAGGATGGATGTTCTTTGAGACCCTCTGTGGTTTCTCCAGGAGAGCAGGCGTTGCGCTACTTCACCCGCGTGTGAAATTACAGGGACACTCTAATCTGACATGTGGCACAGTGCAGTCTCAAGCGCTTCTCTCCTGAATGCTGGTGGTTAACACCCTTTTGGCCTTTTAAGATCTTTGCAGGGGAATGTTTGAAGCTTCTATATAAAGTTTAGCACCACTTGCTGGAAGGAGGTTGTgtagctgtgctgtgtgtcagtctctTCAGATATAAAGGACCTTCATAGGTTTCTGCCCAGGGATGTTCAATGTTGCCTATCCGATTTAAAGTGTTACAAGTTTTACATCTGCAATAGGTGTCCGCCACATCTCAACCAGTCCTGCGAATCTGTGTGTGCACGTTAGTGTCCCTCATTGAAACCATTGTGTAAAAACATCTCTTCAAAGGGCTGATGTTCCCATGATGTGGCATTCCCACTGTGTGGTAACCCACACTCTCGTAGCAGTATTCTTTTGTCCTTCGCTCCTCTACTGGAATCCAGCTAGGATGAAttaggaaacacacacactcgcttAAAACGGTGAATGAAACCGAGAGAATCTTCCACCAGATGAAAGACTGGTGTGGGCTGGGGTGTCTGAGCTGTTAGCTTTGGGGGGGCATATCAGCTGTGGTCCGTTGGCCAATAGGAAAACCAACAACTGGCCTCTTCCTCATCACTTTAAACTGAtggaaatgttattattattttggagaGAATTTAGAAAGGCAGTGCTCCCAGGTTTTGCAgacccccccctctccccctgctGACTATAGGGTCTGGTCTAGACTGGCATCTGCTACCAGTGGCCCCACCTTCCTCCTGTCCTTCTCGAGAGACATGAGTGTGATGGTTTGTGACTCCCACCCCTCTGGAGTGGACATCTTGCTGGTAGAAAACACTGAGTTATTGTCAGCCCCTGtgtgaaattattaatatttataatggtggttggctttgtatttttttttctcttcctccccctTCCTTATCTGTTTGCAGATCAGAGAATGTTgtacattgaaaaagaaaaggaaataaaaaacaaaacaaaaaaagacaattgaagacatta

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0048568 embryonic organ development biological_process
GO:0048869 cellular developmental process biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0030903 notochord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131117 True 4679 lncRNA 0.46 1 12935482 12940160

Neighbor

gene id symbol gene type direction distance location
AMCG00011170 NA coding downstream 116138 12815427 ~ 12819344 (-)
AMCG00011167 NA coding downstream 329838 12596134 ~ 12605644 (-)
AMCG00011166 NA coding downstream 340069 12582105 ~ 12595413 (-)
AMCG00011155 cdc23,LOC107692994,LOC106603039 coding downstream 378839 12551208 ~ 12556643 (-)
AMCG00011156 NA coding downstream 394105 12529830 ~ 12541377 (-)
AMCG00011173 NA coding upstream 26377 12966537 ~ 12984196 (-)
AMCG00011175 NA coding upstream 45225 12985385 ~ 12986581 (-)
AMCG00011178 slu7,LOC107741361,LOC107550887,LOC107756482,LOC107680665,LOC107676532,LOC107601502 coding upstream 48489 12988649 ~ 12999288 (-)
AMCG00011180 NA coding upstream 64378 13004538 ~ 13013351 (-)
AMCG00011179 NA coding upstream 79746 13019906 ~ 13034119 (-)
G104845 NA non-coding downstream 4399 12928672 ~ 12931083 (-)
G104776 NA non-coding downstream 171815 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 411124 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 442381 12429965 ~ 12493101 (-)
G104665 NA non-coding downstream 532918 12402364 ~ 12402564 (-)
G104915 NA non-coding upstream 435973 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 437897 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 613280 13553440 ~ 13555074 (-)
G104928 clint1a,LOC108441628 non-coding upstream 722026 13662186 ~ 13667716 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 924361 13864521 ~ 13867615 (-)
AMCG00011169 NA other downstream 108602 12821025 ~ 12826880 (-)
G104749 NA other downstream 295255 12634856 ~ 12640227 (-)
G104715 NA other downstream 386489 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 478155 12427993 ~ 12457327 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 607200 12326097 ~ 12328282 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2230 12942390 ~ 12956267 (-)
G104909 NA other upstream 424923 13365083 ~ 13367074 (-)
G104929 NA other upstream 725635 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 1053823 13993983 ~ 13996589 (-)
G105050 NA other upstream 1127055 14067215 ~ 14068561 (-)

Expression


Co-expression Network