G104928 (clint1a,LOC108441628)


Basic Information

Item Value
gene id G104928
gene name clint1a,LOC108441628
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13662186 ~ 13667716 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131241
CCCTTCCCCCTTGCCCCAAGTCCTCACACCTTGTTCTGCGCCCCGGCGTCAGGACTGCCCGTGTCCCCGGTGTAGTGTGCGGCAGCCCCCAGGTCCACAGTTTTGGAAGGGACGCCCCCCCGTTTCCGCGTGTTGGTCGTCTCCGTGGCCTGAGTGAACTGGGTGCCCCTGGGCGTCGCTGTGTCCTCCTCATCCTTGAACTCTGACTTGCCCGGCCTGCCGTTGCGGGCAGCTCGCTCTCGGTCTTCCTCGTTGTCGCTGAACCTGTCAGGGGAGTCGTCCCTCTCCTTCTTGCGGAACTTGTTGATGGTGTCGTCGATTGTGCTGCCGATCTTGTCGCTGATCTCACCCAGCTTCTCGCTGAAGGGGAACACCCCCTTATTCTTGTCCCAGTCCTCATCCCACCGTGACTTGGGCTCCGACTCATACCGGTCTCCCGTGTATCTGAAGCCCCCCAAGCTGTCAGAAGAGACCCCGATGTATTTGTCCTTGTTCTTCTTTgccttcttcctctcctcccgAAGCCGGTCATCGTCCTGCACGAAATCCACCATCTCTTTCACCTTCTGCCGCACGTTGACGCCCTGATCCTTCCCGTTCTCATCTACAAAATGATAATTTTCCATCGACCGCAGATCATAGATGTGTTCCCTGGCGCTCGTCACGACTCTCTCTGACCCGTTTCTGATGAGGTATGCTAGGAGCAATAAGGCCTTGTAAACTCTTCTCCAGTTCTTCTTGTTGTCCTTCAACATGCGAGTCCACAGCATGTTCATGACTTCTGGGAACTGTTCGTACATGAATGTGGAT

Function

symbol description
clint1a Predicted to enable clathrin binding activity and phospholipid binding activity. Acts upstream of or within regulation of epidermis development. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of clathrin vesicle coat. Predicted to be active in endosome and plasma membrane. Is expressed in epidermis and ventral fin fold. Orthologous to human CLINT1 (clathrin interactor 1).

NR:

description
clathrin interactor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131241 True 810 lncRNA 0.56 5 13662186 13667716

Neighbor

gene id symbol gene type direction distance location
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding downstream 318722 13328493 ~ 13343464 (-)
AMCG00011183 NA coding downstream 470046 13186948 ~ 13192140 (-)
AMCG00011182 NA coding downstream 557631 13056733 ~ 13104555 (-)
AMCG00011179 NA coding downstream 628067 13019906 ~ 13034119 (-)
AMCG00011180 NA coding downstream 648835 13004538 ~ 13013351 (-)
AMCG00011194 NA coding upstream 16918 13684634 ~ 13687704 (-)
AMCG00011200 NA coding upstream 76202 13743918 ~ 13745225 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding upstream 84837 13752553 ~ 13778757 (-)
AMCG00011203 NA coding upstream 189141 13856857 ~ 13858270 (-)
AMCG00011208 NA coding upstream 251952 13919668 ~ 13922667 (-)
G104921 NA non-coding downstream 107112 13553440 ~ 13555074 (-)
G104916 NA non-coding downstream 283887 13378057 ~ 13378299 (-)
G104915 NA non-coding downstream 285189 13376133 ~ 13376997 (-)
G104846 NA non-coding downstream 722026 12935482 ~ 12940160 (-)
G104845 NA non-coding downstream 731103 12928672 ~ 12931083 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 196805 13864521 ~ 13867615 (-)
G105048 NA non-coding upstream 397625 14065341 ~ 14065908 (-)
G105052 NA non-coding upstream 402688 14070404 ~ 14070969 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding upstream 531111 14198827 ~ 14203536 (-)
G105080 NA non-coding upstream 551239 14218955 ~ 14261910 (-)
G104909 NA other downstream 295112 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 705919 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 835306 12821025 ~ 12826880 (-)
G104749 NA other downstream 1021959 12634856 ~ 12640227 (-)
G104715 NA other downstream 1113193 12548289 ~ 12548993 (-)
AMCG00011211 NA other upstream 326267 13993983 ~ 13996589 (-)
G105050 NA other upstream 399499 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 1702686 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1831818 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 2295622 15963338 ~ 15973872 (-)

Expression


Co-expression Network