G104980


Basic Information

Item Value
gene id G104980
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13858651 ~ 13858982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131311
CTCGGGCTTGCGAGCGCAGGTCATTGTAACGCGGTGGAAACTATAGGGAGATTAATTCGGGAACAACTGAACATCAATCAATCGCTCGTAGATCACAGTTCCAGCATCTCGAAGCGCTTGCCTCGAAACCGGGTAACAAGAAAGAGGCGAGGAAGTccaaatacaatgtaaaatacaatgtgttaaTAGTTGTGACCTATGTATAAGATATGTGACTGCCAATATGTCTTGGTGCGCAGAGGAGCGCTTCGCACGCAGTGTGCCTCTGTAGTGACAGAGAGCAGTGTTGgagaggggaagaaagaaaaaaagatgcaCATTAATAAGTCAAT

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131311 True 332 lncRNA 0.45 1 13858651 13858982

Neighbor

gene id symbol gene type direction distance location
AMCG00011202 pcyox1l,LOC107581983,LOC103475662 coding upstream 3807 13851441 ~ 13854844 (+)
AMCG00011197 tcerg1,LOC102783943 coding upstream 116644 13722539 ~ 13742007 (+)
AMCG00011196 NA coding upstream 136990 13707524 ~ 13721661 (+)
AMCG00011199 NA coding upstream 161943 13691836 ~ 13696708 (+)
AMCG00011195 thg1l coding upstream 167288 13687256 ~ 13691363 (+)
AMCG00011201 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding downstream 5633 13864615 ~ 13867345 (+)
AMCG00011205 crebrf,LOC106603875 coding downstream 32772 13891754 ~ 13900038 (+)
AMCG00011206 sec20,bnip1b,LOC105011259,LOC106603874,LOC106567448,LOC107727279,LOC108441621,LOC107587246 coding downstream 50750 13909732 ~ 13914186 (+)
AMCG00011212 NA coding downstream 213386 14072368 ~ 14076417 (+)
AMCG00011213 LOC106567451,LOC106603869,LOC107661726,LOC108441632,LOC107713183,LOC107662844,LOC107587249 coding downstream 236173 14095155 ~ 14096053 (+)
G104979 NA non-coding upstream 459 13857831 ~ 13858192 (+)
G104923 NA non-coding upstream 179271 13665947 ~ 13679380 (+)
G104910 NA non-coding upstream 303595 13553401 ~ 13555056 (+)
G104883 NA non-coding upstream 629235 13186948 ~ 13229416 (+)
G104835 NA non-coding upstream 839587 13018792 ~ 13019064 (+)
G105046 NA non-coding downstream 203718 14062700 ~ 14063157 (+)
G105051 NA non-coding downstream 211418 14070400 ~ 14070969 (+)
G105078 LOC103376870 non-coding downstream 359968 14218950 ~ 14262016 (+)
G105113 NA non-coding downstream 597120 14456102 ~ 14459018 (+)
G105143 NA non-coding downstream 805638 14664620 ~ 14665153 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 915569 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 1179222 12670376 ~ 12679429 (+)
G104719 NA other upstream 1239596 12610129 ~ 12619055 (+)
G104694 NA other upstream 1331620 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1718186 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 9355 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 126683 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 154139 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 760708 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1461798 15320780 ~ 15322658 (+)

Expression


Co-expression Network