G105048


Basic Information

Item Value
gene id G105048
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14065341 ~ 14065908 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131407
CGTGCTTTCCTGCATGTCTTCCCTGGTCTTGGGGATCCCTGCTGTCCTCCCTGGCCGAGGCCCGGCTTCTGCTCTGCGTTTTCACACAACCCAGCTTACGTGCGTTTCGCGGGAAGACGAGCCTCACTTTGAATTTTCCTTTACTCTTAGGGTGTTTTTTCGGTCGTTTAGCGCCCATTCCCGCCTCAGCTGGGGTTGTGGTGGACAGGACAGGGGACATATCACGCTGTGAACTAGTCTTCCGGGGAAGGGGAATCGTTTTGTTGGCTGTTTTTTCTGCACGGTGTTTCTTGTTTGCCCTGGCCTTTCGGGTGGCGGTTTCTTCCGTCTCATTCCGGGCCTCTTCTTCGCGGTTGAGCGGAGCCGGAGATGCGGCCTCCTGGACCGGGGCCCTTTTCTTGCTTCTCATCGCGCCCCCGGTTTCATAAACGAAGGAGTCCGAAGAGTGTCTGCCAAACTGGCCAACATACACCACCCTGAGCGGCTTGGGTTTGGTTTTGACCATTTCACACCTGAGCCTCTAACGCACTATCTCCATTACATAGTTTCTCCGCAGTTCCTGCTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131407 True 568 lncRNA 0.55 1 14065341 14065908

Neighbor

gene id symbol gene type direction distance location
AMCG00011207 stc2 coding downstream 118793 13939359 ~ 13946548 (-)
AMCG00011208 NA coding downstream 142674 13919668 ~ 13922667 (-)
AMCG00011203 NA coding downstream 207071 13856857 ~ 13858270 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding downstream 286584 13752553 ~ 13778757 (-)
AMCG00011200 NA coding downstream 320116 13743918 ~ 13745225 (-)
AMCG00011216 LOC107713182,LOC107587250,LOC107684217,LOC107581908,LOC107661723,LOC108429399,LOC107727287 coding upstream 145717 14211625 ~ 14340740 (-)
AMCG00011222 stk32a,LOC107692947,LOC108414397,LOC107713578 coding upstream 399249 14465157 ~ 14467077 (-)
AMCG00011223 stk32a,LOC104947536,LOC106965095 coding upstream 416462 14482370 ~ 14489581 (-)
AMCG00011230 NA coding upstream 480163 14546071 ~ 14576028 (-)
AMCG00011231 NA coding upstream 583470 14649378 ~ 14676424 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding downstream 197726 13864521 ~ 13867615 (-)
G104928 clint1a,LOC108441628 non-coding downstream 397625 13662186 ~ 13667716 (-)
G104921 NA non-coding downstream 510267 13553440 ~ 13555074 (-)
G104916 NA non-coding downstream 687042 13378057 ~ 13378299 (-)
G104915 NA non-coding downstream 688344 13376133 ~ 13376997 (-)
G105052 NA non-coding upstream 4496 14070404 ~ 14070969 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding upstream 132919 14198827 ~ 14203536 (-)
G105080 NA non-coding upstream 153047 14218955 ~ 14261910 (-)
G105105 NA non-coding upstream 353793 14419701 ~ 14420053 (-)
G105107 NA non-coding upstream 361511 14427419 ~ 14434667 (-)
AMCG00011211 NA other downstream 68752 13993983 ~ 13996589 (-)
G104929 NA other downstream 386079 13665795 ~ 13679262 (-)
G104909 NA other downstream 698267 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 1109074 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 1238461 12821025 ~ 12826880 (-)
G105050 NA other upstream 1307 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 1304494 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1433626 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 1897430 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 1977463 16043371 ~ 16098179 (-)

Expression


Co-expression Network