G105077 (LOC106567452,LOC106603868,LOC105011253)


Basic Information

Item Value
gene id G105077
gene name LOC106567452,LOC106603868,LOC105011253
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14198827 ~ 14203536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131436
CACAAACCATAACCTTTGCAATAAaaaacagctgtttgtttgtaacaaacataatcacaataataacgCTGGTAgacatagtagtagtagtaataataataataataataataataataataataataataataaaaacactggcCTGTGCAACATCAAAGGTGGTTGTGTAACAAAGGCACATTTCATTAAGTTGAATGGCAGCCAGCTCCTGTTCAGTAACTTTTGACTAATTTCCTCtttcaaattacaataattgttattatcattgttactcttttaaatgtgtatgactGCGAAGATATTCACATGAGATTAACTCTTTGAAGGCATGAACTGAGCCATGcaatgttttgaagatattcTTTAGGAAAGAAACTATAACTCTCTCACACTACagcttcttattttattttcagcttgACATCAAGATAATATTATTTCCGTCAGTTTGTGCACTGCTAATGtttaatgtgaaatatgtatGGCTTTTGATATGGTCCTGTATATTTGACATGGTAATTGCTTCACTTAAAGTAAATAGAATAATTTCTGATAAATCCAAAGTGCAGGGCAGTAAAAGCAAAGTATTTAACTTTTAACCTGctcagaaacaaaaaagaaaaattaataaaacctgtGATTCTCTTTGTAAATTCTTCTGTCTCTGCCATGGCATTCAACTAACATCATAACTGTTCCTAATTTACAGTAAAAAAGGAAAGGCTTTGTTGAGTGTTTAGAGCTGCTACCATACTGGAGAAACAGAAGGAGTTCATTAGTTTCCTTCATGTTCACAGTAGTGCTGGAGCTTTACTActgcaaatacattatataatgcaGATACAATTATATAGTTATCAGCAAGTGTGTCTATTGCACAAGCTTTTTTAGCCTGTCAAATGCTTGTCCATAGCTCTTAACTGTTGGTATCTGTGGCTACACTTTATtaatgcagtaataataataatctttcagAGGCACTTTGTCAAACACACAGGAGACGCTCTGAAGAATAGGGATGAAACCCTTGTGCTCctattctaattaaaatatcttgAATAACATGATTGTGTTTAGTTATGATGTATTGGAAATGTCATACTTTGTTGTAGTTACTGTTAATCTAGTTTCCCCCGAGAATTCAGAAACATTCACAGGGCTTTAATTCACATTACAGACAAACTGGTGTGTCAAAGGGCAGGGCTACTGGCCATAAACTAGACAACATGTTCATTTCACATCTGGCAAGGACAAGCTGGaacatttgatttggttttgtaaCTGCTGCAAGCTGgtccatattttatttatttatttatttatttatttatttatttatttattgtgttactGCTTCAAAcactgaatgcaaaatgtaagtTGACTAGTTGCTGACAACCTATtcaatgtttttctgttatggatatacataaaaaaaaaatgtttttgttttttttaatctagtgTTGAAAGAGAAAGtttttttaagagaaatgtataccagttttacacaaaataaacttaaaaatatagacttctctctctcattacatataataatatataaataataatatatacattacaggTATTGGTGAAAAACGCTATAACAAAGTTCATGTCATGTGGATTTACTGGTTACCATTTTAACATCACTTCTATTGGGTAGGACTGTGGAGGGAAAGGAGCCAAGAGGTCCTCGCATGACGTCAGCAGATATTTTTCTATCAActtctttgtttttcaccaGCAACCAATATATGTGGCCTACttagcaaacaaaaataaataaagtacacaaAACTGTTTGGGAAATTGTGATTCAGACATGACTCCCTTGAACTACAGAAATCCCAGTGAGCATTTCTCCACTTTCACAAACATCTAAGGATCTGCTGTTAATTAAGGAGATTGTTAAAAGGCTTCTAGAACTTGTAAGATGTGCCTCATTTTGATTAAAAGAAACCTCGTAAAGTGAGTGGTGCTTATTAATGATTTCCTCTTCAGATCAAAGGAACAGGGCAGTTCTGAGCAGTCCTAACAATAGCCACATAAAAGCATCCACCTCTATTGAGTGAGTGCATGATACAGGAGCCTCGCCATCTTCAGAAACACTTTGCACACCACAGTTATTAAGGCTTGTAAAGTGGTTTTCTTTTACAAAGGGAACGCATGAAGCTCTAACTTTATTACTCTAATTGTTGACCAAATCCACAAATATCCCCacttcaaatatttgtttctcaacgtttaaataaaacaaaagaatgcAGCCACGACCCTAGACaggaaaagcaaacacaaatgggaacgagagagagagaaaataatacaatgacaaATCCAACTGTATACTTAAACAGCTTTACTCTGCATCAAAGAATCTGTAGCTCATTGTTAGGAATATAAAAAAAGGGGTGTGAAATTAATCTGTGTTGCTCATTCCCTCCTGTTTCACGTCCAGACTCCACTGTTGTCATGCGCTGAATGGGCAACATGAAGAATGATCTGAGCATCTGAATGGCATTATTGATTCCCCGCTGGACCATACACGGGGAGCAGAGACTGGATATCATCACAGCTGAAAGCGTGACCAGTCTAGATGCCCAGGATGCAGACAGTTGACACACCCCACACATTCGGATTGCCCTAATTGCACCCATTAAACGCACCAACGACAGTCAAGCTCGCTGATCTGGATGCCagttaatttatacatttttacacaatatTGCAGCTTCACTACTGTCTTTGTGATAGAAGGTTGTAAAACTATACCACCTAAGTAACCCTTTATTAcgtttttctttaatgtaaaaatgctgCAAATTATTTGATTGTGAATTTAGTTGGTGTGTAATCAaggaaagtaaagaaaaatatgataACTTGcttcaaaacacaattttaatttaatgtcagatGAGAGGTaaggaagattaaaaaaaaaacatctttgctagctttttaaaaactgtacaaGACAACTCCTTTCAAAGGAGCAATTTAAGGGTAAAAATACtccaatatatatttgtaatttattctgaatatttgtacattttcatgtttaatctGCAtgctataaatacaaaacatcatCACCCAGATATACTTTTAGCATTCAGTTATAGAGAAAAAAAGTGAAGCAGAATTTAACTAGATTTTAAACCTGACTGCttcttacaaaatgtatattgccAAGTACTGGGTAATGAGATTGAGGCTCTGTCTCTCAGAATTAActttaatattgtataaatGGTTCTAGAGGTTTAAAGAAAACATCATACACAGTCATAAATGCTGTTGTTGATAGATAAGAAGCCTACATAAGAATAGTTGGTGCAAAGATAACATTATGGAAATGCTGCTTGAATACCATCTGCAAAACTGCTGTTTATATGATACTGAcaagataataataaagcaactaGAAGAAATACCAATAACTAAATATCAAGAATACCAATACCTTGAGTGTATAGTTTTagctctgcctctctctctctctctctctctctctctctatatatatatatatatatatatatataaataaataaagaaataaattcaGGCGATTTTGTTTATAGCAGTATAAGAGTACCTGGATGTTTCTCACAACAAATGATCAACAGGGGTCCGGTAGAATTTAAGACAATACCACCTAAGGCGGTAACGCACCCGCTTCTAGAAATCCTTACAATTAGCTGAACAATTATGAAATGCAGAATGTTCTtggttaaaacaataaataaaataaaaactgaatgaatAATTGTGATACGTGAATATGCTCATGAACCTGGCCATATTCACTGtgcgaaaaaaaaaatctaaactaaaaaGATTGAAACTTTCAACTACTTCAATGCAGCGATATAGGGTTTCTGTGTTCTCTTGTAAACAACGTCTGCCCATATCCCATCTTCACTCGatgattttcatttaattaattacacttGTGACAGTCAGTCCCATTTGTGAAGGTGTGGtttggttgttttcttgttttccatttttggaAGCgtgtaggcctatgtattttCTACCTGTGTCTATTATATATGATCAGTTTGTGTGTGACTGCAGAACCTGGAGTTCAGTTCAAGGCCCCAGACAATGGCACCTTGCCTTTGGTAGGTTTTGTATTTATGTCATGCAGGAAACATCAAAATAGAAACTCTCTCAAAGaacaacaaaattgaaaaatccACAAAACCAATCTTGTATTTCGTCTCTGCCAACCCTCCCCCCTAGCCCCTGTCTCAGATCAATTTCATGATAGATGGTACATGCTATATCCAACAGGAGCTGCGTAAAGTCCAACTGGAGACACAGGAAGCATAGGCCGGTGGAAAGGATAGGACTGTCCGTAGAGGGAAGCGGTCTGGAGCGGGGAGCTGAGGGGGAATGGTAACGTGAAGCCGGGGTGCAGCATGGGCTTTGTTGccattttcagtttctccagCTCGGCCTCCTGCAGTCTCTTGGCCTTGGCTCTCCGGTTCTGGAACCAGATTTTGACCTGGGTCTCGGTAAGGTTCAGGGAGCTGGAGAACTCGGCCCTCTCGGCGATGGACAGGTACTGCTTCTGACGGAACTTGCGCTCCAGTGCCAGCAACTGCGATGTGGTGAAGGGGGTCCGGGGCTTCCTGTTGGTTTTGTGCTTCCTCAGGGAGCAGGTCGTAGGGCTCAGCTGCC

Function

NR:

description
PREDICTED: homeobox protein MSX-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131436 True 4710 lncRNA 0.36 1 14198827 14203536

Neighbor

gene id symbol gene type direction distance location
AMCG00011207 stc2 coding downstream 252279 13939359 ~ 13946548 (-)
AMCG00011208 NA coding downstream 276160 13919668 ~ 13922667 (-)
AMCG00011203 NA coding downstream 340557 13856857 ~ 13858270 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding downstream 420070 13752553 ~ 13778757 (-)
AMCG00011200 NA coding downstream 453602 13743918 ~ 13745225 (-)
AMCG00011216 LOC107713182,LOC107587250,LOC107684217,LOC107581908,LOC107661723,LOC108429399,LOC107727287 coding upstream 8089 14211625 ~ 14340740 (-)
AMCG00011222 stk32a,LOC107692947,LOC108414397,LOC107713578 coding upstream 261621 14465157 ~ 14467077 (-)
AMCG00011223 stk32a,LOC104947536,LOC106965095 coding upstream 278834 14482370 ~ 14489581 (-)
AMCG00011230 NA coding upstream 342535 14546071 ~ 14576028 (-)
AMCG00011231 NA coding upstream 445842 14649378 ~ 14676424 (-)
G105052 NA non-coding downstream 127858 14070404 ~ 14070969 (-)
G105048 NA non-coding downstream 132919 14065341 ~ 14065908 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding downstream 331212 13864521 ~ 13867615 (-)
G104928 clint1a,LOC108441628 non-coding downstream 531111 13662186 ~ 13667716 (-)
G104921 NA non-coding downstream 643753 13553440 ~ 13555074 (-)
G105080 NA non-coding upstream 15419 14218955 ~ 14261910 (-)
G105105 NA non-coding upstream 216165 14419701 ~ 14420053 (-)
G105107 NA non-coding upstream 223883 14427419 ~ 14434667 (-)
G105112 NA non-coding upstream 243802 14447338 ~ 14449781 (-)
G105176 NA non-coding upstream 685690 14889226 ~ 14889437 (-)
G105050 NA other downstream 130266 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 202238 13993983 ~ 13996589 (-)
G104929 NA other downstream 519565 13665795 ~ 13679262 (-)
G104909 NA other downstream 831753 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 1242560 12942390 ~ 12956267 (-)
G105290 LOC108429417 other upstream 1166866 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1295998 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 1759802 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 1839835 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 2740396 16943932 ~ 16961069 (-)

Expression


Co-expression Network