G105112


Basic Information

Item Value
gene id G105112
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14447338 ~ 14449781 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131475
CGATTGCAACTGACGTTTATTCAGGAAAAATTCATACAACCATGTAACATTTCATTGGTTTATGACCTGCTTGTTTCGGGAAGCTgaaacaacagtaaaaaaaaaaaaaaagaaaaaaaaaaaggagtaataactaatataaatataataagcaCTTTTATGGTTCGTGAATGCagcattgttgtgtttttgttttttgttttgctttactcACTATCTACTACCTTGCACTCTTTGCTCAATGTGATTGGGTTTCCAAAAAACTGCTTTGCAATTCAATTCAGTGACTCAAAATGCTTTGAATCACAGAAACATACAAAACTTTTGATCTATGTTCAAATGGAGCCTAAACAATACAGAATGCACAGGGTTTATGAGTTTAAATCTCCACACAACCCATTGTTTGTGACTGCAAGCCTTCATCACATGAAATATTATCAGTGATAAAAGCACTGTTCTGTGAGCTGTTGGATCCCTTCAGACCTTCCTGTGCTGTTCTATTTTCACTGAATTGTGAATCCCTTTCCTTACTTCATGAACTCCCACATGCTTCAAAGAGTTAAGTATTATACCATGTAATCCCCTCACTTTCTCACACAATTTTGTTGATTTTCTGGGAATCAAATTACTTTACCGTAGGAGAGGAGGGCATAAATAAAAGGCCGAATGCAATATGAATTTGGagttttacctttttaaagCTACCCGATAGCAGTTGAACTGAGATTTTCATAATGCAGGAAAAACAACTTTTCAAATGcttactttttcacatttcacactaTATGCTCAATGTAAGATTTGACAAGGTATTAGGTACAAGAGCGGGTAATAACAAGCCAATGCAAAAGACAAATGCCTACAATGAACACCCAGGTAAACAGCgtttgggaaaataaatcaacttttcataaaataatgtgttcttGCATGTTTACAAAATCTGTATACCACAAACATGTTTCCCCCCCCcagatttttcttatttttatgtttaattcattAAGCTACCAAATATTCCTGGTTAATTAGCCCAAGGATATATGCAACCACTGGTTTAACAAAGCTACATTACATCTATGACTCACAGCGCCACCTATCTAGTATTGATGGTATTGTATGTTAACATTGCTATGGACTATTGCAAACTAGtaattcttaaaagaaaaaaatgacactGAAAGCTTAGTATCAAAAAGGTTCAAAGCAACATTCTTAAATATGCAGTATTCCTTTTAATAGAAAGCAAATCATCAGACAAGAAGGAAACAACCCGAATGCTGAAGAAAGTAATTGGTCTGTGCTCTCCTCATCACAGTGACTTGCAAATGACTAATGTGAATCATTTAGCATCAAAGCAccagttaaaatataatttgaagcaGGATTTCAGTAATCAATTAttgaaaaccaaacacacacacacacacacacaaataaacaggctGCCATTTTACATCATCAGGAGATAAAGATAGAAACACTCAGAAAACAGTCACTACAATTATCGCTAATTAGGCTCTACATCATCATGTTGTACAGCCTGGAGTCTTCCTGAAcccgtacacacacacacacacacacacacaccttgcttCCCCTCATAGTTTGTAAACATCCATTTATATGCATGTAGTTGTAGCAAACGAAACATTAAGAACACACTTAAATTCAAAAATGCAAGAAATGTAAGTTTGTACTGACTGACTTCGTTTACTGGTTTTAGTGAAGCAACTGTCCAATCTGAACTTTTACTCAAAACAACCATCAAATTTTGTAAACTTCCAACGAGAAACAATCTTATaagaaaaatgtactgtttttatttcagtgtctTTCAGGCTAAAATACGGGAAATAGGGATGCAGCTGTggttcacattttaaaataatttctcgTGCACCCTAgtttgtctgttgttgtttggcCCCCAAAGTTGTTCTACCTCCCACCATTATTCACATAAAGCAGTTTCCCAAATTCTGATTTATGATTTTGTAAACTATACATTTGTATagtctgaagaaaataaataactaacatGCTATAGAGAAAGACACTGGTCTGGAAACCATAAAATCCTctctggtgtgtttgtgtgagaaataCAGTTTGGTCCGAAGGATAGTAATGTTATGGATGGTTGAAGTTTTCCTGCGCGCAACGTTTAATGgtttaatgtgttatttccATCATTAGGCTGGGCCTTCTAAAGAAAAGGAATACTGCATTCTTAAAGCTATAGCAGGTAGCATTCGTGATTGGTAAGGCATGAGgcttctgtgttttgttcaaTTTCAACTTAAACCAATCATGTTTCCTTCCCAAGTAGCTCTGTTAATTGCTTTAGCTCAGAGATGTAATATTGGAGCGGCCACCAGGGGGCACCACAATGCGGCGCCCTGCAGGTCGGATTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131475 True 2418 lncRNA 0.36 2 14447338 14449781

Neighbor

gene id symbol gene type direction distance location
AMCG00011216 LOC107713182,LOC107587250,LOC107684217,LOC107581908,LOC107661723,LOC108429399,LOC107727287 coding downstream 106598 14211625 ~ 14340740 (-)
AMCG00011207 stc2 coding downstream 500790 13939359 ~ 13946548 (-)
AMCG00011208 NA coding downstream 524671 13919668 ~ 13922667 (-)
AMCG00011203 NA coding downstream 589068 13856857 ~ 13858270 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding downstream 668581 13752553 ~ 13778757 (-)
AMCG00011222 stk32a,LOC107692947,LOC108414397,LOC107713578 coding upstream 15376 14465157 ~ 14467077 (-)
AMCG00011223 stk32a,LOC104947536,LOC106965095 coding upstream 32589 14482370 ~ 14489581 (-)
AMCG00011230 NA coding upstream 96290 14546071 ~ 14576028 (-)
AMCG00011231 NA coding upstream 199597 14649378 ~ 14676424 (-)
AMCG00011229 NA coding upstream 238398 14688179 ~ 14701429 (-)
G105107 NA non-coding downstream 12671 14427419 ~ 14434667 (-)
G105105 NA non-coding downstream 27285 14419701 ~ 14420053 (-)
G105080 NA non-coding downstream 185428 14218955 ~ 14261910 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding downstream 243802 14198827 ~ 14203536 (-)
G105052 NA non-coding downstream 376369 14070404 ~ 14070969 (-)
G105176 NA non-coding upstream 439445 14889226 ~ 14889437 (-)
G105187 NA non-coding upstream 479020 14928801 ~ 14929049 (-)
G105213 NA non-coding upstream 604635 15054416 ~ 15054817 (-)
G105221 NA non-coding upstream 669426 15119207 ~ 15119433 (-)
G105249 NA non-coding upstream 783922 15233703 ~ 15300851 (-)
G105050 NA other downstream 378777 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 450749 13993983 ~ 13996589 (-)
G104929 NA other downstream 768076 13665795 ~ 13679262 (-)
G104909 NA other downstream 1080264 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 1491071 12942390 ~ 12956267 (-)
G105290 LOC108429417 other upstream 920621 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1049753 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 1513557 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 1593590 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 2494151 16943932 ~ 16961069 (-)

Expression


Co-expression Network