G105143


Basic Information

Item Value
gene id G105143
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14664620 ~ 14665153 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131518
CCTAATGGGCTCTCCAGCACATCCATAATGACCGAGTCTGCACCTTTGGTGTAGACGATCACCTCCTTGGTGACTGGGTGCCTGACCAGCACAGACATCATCTTTCTGTTGGAGTCGAAAGGCAGCGTGTGCAGGACCTCGAAGGTAAGGATGTTGCCTTGTGGCAGCTTCACAGTCACCTGATCTGTAGTGCGGGACAGCAAGGTGAAACCATAGGCCTTTGCAGCGTAGACCAAGGCTGCTTCATCCGGACTCTCTGCCTCGTAGCACAGGCGGTCCGGGTTTGGTTCTGCAGGCTGGCTTTTGTCATCTACGTCGCACTTGTTGTCCTCACTGCTGGTCGAGCTGCTGTCTTTGTAGCTGCTGGAGATCCCATCCTCAGCGCCGTGGTCGTTGCTCGTGGAGGCTCCGGTACTCAATGGACTAACTGAGGTTTTCTCGGTAATGGACTGGAAGGAGGTCATGAATTCGATCAGACgttctggtttcatttttttcaggaTGCTATGCAGTCTGCCAATGGATTTCAAGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131518 True 534 lncRNA 0.53 1 14664620 14665153

Neighbor

gene id symbol gene type direction distance location
AMCG00011224 LOC108435599,LOC101068624,LOC105904085 coding upstream 56037 14598190 ~ 14608583 (+)
AMCG00011221 NA coding upstream 125761 14502980 ~ 14538859 (+)
AMCG00011218 dpyl3,dpysl3,LOC106567513,LOC105900346 coding upstream 214943 14427479 ~ 14449677 (+)
AMCG00011220 NA coding upstream 237990 14419728 ~ 14426630 (+)
AMCG00011219 LOC103361792,LOC102209146 coding upstream 253604 14396782 ~ 14411016 (+)
AMCG00011226 NA coding downstream 231043 14896196 ~ 14906606 (+)
AMCG00011225 gabra1,LOC106567505 coding downstream 276608 14941761 ~ 14963439 (+)
AMCG00011227 gabrg2,LOC107603256,LOC107661671 coding downstream 350642 15015795 ~ 15023060 (+)
AMCG00011228 gabrg2 coding downstream 368786 15033939 ~ 15041745 (+)
AMCG00011234 nudcd2 coding downstream 566294 15231447 ~ 15233722 (+)
G105113 NA non-coding upstream 205602 14456102 ~ 14459018 (+)
G105078 LOC103376870 non-coding upstream 402604 14218950 ~ 14262016 (+)
G105051 NA non-coding upstream 593651 14070400 ~ 14070969 (+)
G105046 NA non-coding upstream 601463 14062700 ~ 14063157 (+)
G104980 NA non-coding upstream 805638 13858651 ~ 13858982 (+)
G105144 NA non-coding downstream 5566 14670719 ~ 14670928 (+)
G105145 atp10d,atp10b non-coding downstream 6145 14671298 ~ 14671549 (+)
G105186 NA non-coding downstream 263490 14928643 ~ 14928940 (+)
G105226 NA non-coding downstream 584585 15249738 ~ 15256622 (+)
G105238 NA non-coding downstream 615302 15280455 ~ 15283748 (+)
G105139 LOC100846954 other upstream 44086 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 603593 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 671775 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 786338 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 1721538 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 655627 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 807106 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 1185493 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 1188611 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 1197879 15863032 ~ 15873489 (+)

Expression


Co-expression Network