G105238


Basic Information

Item Value
gene id G105238
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15280455 ~ 15283748 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131624
TGTAATTTATTCACATTATAACAAAATATTCTTACATATATAATATGCTTTTCATGCGACAATGTGAAAAAAGGCTTTACAGAGTATGTGCAAGGCAAACTAGGGTGCAATATATGAAAGTGAAGCAAGCACATGATGGAGAGTTAATCTGACCGCCACAGAACTACACAAGCGCTGCATGGGCTGGGCTCCATTAATTCCTTACACAGAATTCCAGAAGCCTAGATATTGAGACCTAAATCAGTTCCCATCAGCAGTACTTTATTATATTCAACTCTGGTATCTAATTGAAGAAACTGCAAACAGAGCAGTTTGGGTAATACATGTTCACGGCTTGAAAGAACAAATTATATTACACCTTCATATCGGATTTTTTGAATAGTTTTGGAAACCACACAAAATAACATATTGGTAAaaattcacaaaaaacaaaacaagacatatACACAATACCAAAAACGTATATACATTTAAGGATACAAAATAGCATGGAGCTATAAGaggatttcattttcaattcttGGGGCTGGATTTCTTGTTTCATGTTCCcgtttgtatttttataccaTTCTTTCAGGTCCCATTAGTAAGAAGGTTAATGTCAGCAGCTGTTTCGCAGGGATTTTGGCTATACATCCGATAACGTTTGACCCATTCCTTTTTCAAACAATGAATCACCACTTATTTAACATATTACtgaaattacaattattcaAACTGTGCAGCAGAAACTTGAAATCAGGGCTGTGACAAATAAGATCATACTACagttttctggaaaatattaaacagaaatataGATACAGTATtgcattttccttattttacaaaatactttaaaattcattctgagaaaaaacaaaaacacatccacAGATGTGTGTCCCATGTCATTTCTAACCTTCATCGCTTCATATTTTGGTCTGGGGAGTCATAGtgcatttatgttttgaattaagTGACTTAACTTCCTACAGAtttgtgaaactgaaacaaatccTCCCATTTTGTCTAGGATTAGTCACTGAGTGCTTGTATGTGAAACAGGCAAATAAATCTAAAGGCTTTGTTTACCAGGCAGAGAAACTAATATGATTGACAAATGATTTTGCTTTGGAAATAATGCAGGGTAATCAGTTCAACCTTCACCAGGAGATTGTTCGattgtaaaaactaaataattactacaaaatatattgtgatgAAAAACATCACAAAGATGTTAAGATATAATGGCTGTATTTCAAACCCTTTGACCAGAGTTAAGTACTGTGTTTGAacttaaaaccaaaaacacaagaaacaagacacacacacacagaaacatacaaCCATTCTTTCCAGTCAATGAAAGGAATGATGAACATCCTACACGTTGGACATTTCGTATTTACAGGCTTGATCAGaccttattattttttctgagcAACACTGCCAcggaaaatacattatacaggAGAAGGTGGTAAATGGCTTAAAGCAGTGTCTCTCCCACTCACCACTCTCTGCATTAAATAGTGCTGGACGGGGGCAGGTGCCGCGAGATTGTGAAAAGGAAGCATTTGGGCAACGAAGGTCCACAGCCTGGCATGGCTGTAGAACGGAGTCTTCCATGCATGTCTATGACAGCGTCTAAAGAGCCACAGAATCACTAAGGGGGGTACAGACCTCTccctttataaatatacatgcaaaaattgtaattatacaGGTAATGTCCCAACAAATCATTGTTGTGTGTGGAACGTGTCTATTCAATGTGGAAGAGACGTGTAAAGGCAGCTTTTGTTAGTGAAAGACTGGTCCTCTTTTCACCATGAAATTCACAGGAATGCAGATAGGCGTGATGAAATCCACACAACAACTAACCAGTCTTGTTGAAACAAAACGACTGGGGATGGAAgtgctttttaaagtttttttgttgttcttttcaaCGCCAACATTCCACAGTTGTaggaatatattaataatcaggacttaaaaagggaaaaagtacCTTCATTTTTAAGAATTTTAATAGGCAAGAGTCTCCTTGGAAAAGCAGTCACAGTGGCATTGCTGCCAGGGGCTAAAGAGTCCAGAGTGAGCAGGAACGGGGGGGTcagtctgaaatagcgaatcaaGCAGGAATGCTGCTGTGAAGAGACTGGAGCTGCTCCTCGCCGATTCGCACCTTCTCCTCCAGGTCCTTCTGCTCTATTAACAGGGAGGCCTTGACTTTGACGAAGTGCTTATAGTCACAGAGCTGCTCCTGGCTCAGGTACTTGGAGAGGATGTCGGACACCACGCGCTCCCTGCGGTCCAGGTTGTCCTTCAGGTCTTTGGCGTCGTCCCTCTGTTTGCACAGCAGACGATGCCGCTCGTCCAGGGATTGtACACTAATGTTTACCAATCATCAGAAATAAGGCTTTAGGATGTTTCACAgcttaagaacataaagtttataatcgagaggaggccattcaaccaatcgtgctcgtttggtgtccattaataactgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131624 True 2505 lncRNA 0.39 2 15280455 15283748

Neighbor

gene id symbol gene type direction distance location
AMCG00011236 NA coding upstream 894 15273899 ~ 15279561 (+)
AMCG00011235 NA coding upstream 31167 15242239 ~ 15249288 (+)
AMCG00011234 nudcd2 coding upstream 46733 15231447 ~ 15233722 (+)
AMCG00011228 gabrg2 coding upstream 238710 15033939 ~ 15041745 (+)
AMCG00011227 gabrg2,LOC107603256,LOC107661671 coding upstream 257395 15015795 ~ 15023060 (+)
AMCG00011240 NA coding downstream 31134 15314882 ~ 15317703 (+)
AMCG00011243 LOC108429417,LOC100380717,LOC108430974 coding downstream 81399 15365147 ~ 15374868 (+)
AMCG00011242 NA coding downstream 93518 15377266 ~ 15381601 (+)
AMCG00011247 ndfip1,LOC106567495 coding downstream 105855 15389603 ~ 15404222 (+)
AMCG00011249 cnot6 coding downstream 273100 15556848 ~ 15565856 (+)
G105226 NA non-coding upstream 23833 15249738 ~ 15256622 (+)
G105186 NA non-coding upstream 351515 14928643 ~ 14928940 (+)
G105145 atp10d,atp10b non-coding upstream 608906 14671298 ~ 14671549 (+)
G105144 NA non-coding upstream 609527 14670719 ~ 14670928 (+)
G105143 NA non-coding upstream 615302 14664620 ~ 14665153 (+)
G105365 NA non-coding downstream 537560 15821308 ~ 15839105 (+)
G105370 NA non-coding downstream 576010 15859758 ~ 15861690 (+)
G105390 ddx46 non-coding downstream 712629 15996377 ~ 15997732 (+)
G105434 NA non-coding downstream 772417 16056165 ~ 16056449 (+)
G105436 NA non-coding downstream 779166 16062914 ~ 16063749 (+)
G105139 LOC100846954 other upstream 659921 14619690 ~ 14620534 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 1219428 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 1287610 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 1402173 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 2337373 12942380 ~ 12943082 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 37032 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 188511 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 566898 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 570016 15853764 ~ 15855784 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other downstream 579284 15863032 ~ 15873489 (+)

Expression


Co-expression Network