G105282


Basic Information

Item Value
gene id G105282
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15385716 ~ 15404233 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131679
TCTGCAGCACATCTGCTATATAAGTGACATTTATTAGACATTTTGCTATATTTACAGtcttacacattttcatttttgacaATAAAAACCCCCAAGGTGCAGTACTACTTGGCAGAGAGTACAGAAAGTGGAACTGTTGCTTCTTACAATTTTGAAGAACTCTTCACACACAATTTTACATCAACTTATATCAGGAAAAGAATACACAGATCAAAGGGATAATCTAAGAAGGTCCTatctgggggggtgggggagatcTATCACAAAGTTGACATAGGCATTCCAAAACGAGagaaatgtttttcagttgcCATTACTATGAATGAAAGACCCCCTAACCGTGGCATGGATGTAGGATAgacatattttgcttttttcccccccaacgCCCACATTTTAACCACctcactataaaataaataaagtctaaAAGCCGTTGTCACTCCAGCATTGCGATAACACAAATCAACATCCCAAGAAAGCGTAGGATGGAGTCTTCTTACTGACGTGTACACAGGGGCGTGGTCTTTTTGAAATGGTCCAGTCAGGTCAGAAAGACATTGCAATGCATGCTGCAGTGAGATGGTTGAACGTGTggttgcacattttattttcacaatacaaCAGTGTTCAGATTTCAGCCGTGATGAAGTTTGGACCCACCACTAAACTATAATCTCCTAAATATATGTCACTATCACTCCCACCCCCCTATTCTTCTGTTGCGTTACTTGCTttctacaaaaatacaattgggAAGTGTTGTGTTAGCAGTGTGAAAGActagaaataaatgcatgtagTACTGCCTTGGTTTGCTTTcttcttctgaaaatgtaacTACTTGGAGCATTCCTCAGCATTACGGCCCGGATCACTGGGTTTTGTTATGCCGTGTATACTTAAGTCATAAATTTACCTGTGCAGTAAAATTAAAGTATTCTGTTCACAAACTTGAAGAAATTTTAGAAAGAGTAACTTTAATTTTATAACTTATATAACAAAACACTGGTTTCAAGtattttgaacaaaataatgtaaaccagTCTGAACTACCGAGAACCCCCCcattaatgtactgtaattcATAAGCAGCATAATGCTGCTTCCAAATCAATTagttttaacagaaaaaaaaaaaaaaaaaaaagagcaagaCTGCCCTCTACTGGCTAAAAAGGGCAAAGTACATGCTATTGAATAACTATGAACAGATAATATATAAGGCAGTATTCGTACATCACAGACTTGATTGCAAATAGCACTGAACATTAGCCACTAATGATTGAATGGTTACAGAATTTTCAGCATCCACTATTAAAATTTTACATCTAGAACCATATAGAAAGAATGTCTCGTCCTTAAACAGTACTGTGTTATTTAaagcagtgatttttttttttccttttgtcttcTGTGATCTAGGTCTCTTTTCACATCCTGCAGGTGCGCAGCCGATTTCTGATGgaattttttcttttgtgggttatttttttttttttttttttttttttaaaggcacattTATTTCAAGACAGGTCAGATAATTATTActacttaaaaataactaacaagCTTAAGGATCGTGACAGTCTACCTGACACTGAACGAAAGGACAAAAAGAGAATTTGAATTTTGAACCAAGAGCAATCCAAGAGTGCAATCTGAAAGCACAACAACCAAGaccattttttaattcacacaGTACTGAATGGTTACCTTGCCATAGCGATACAATTTAGATTACACATCTACCTTGCGAAGTTCATACTCAAAGGTGGTAAAGGTGTAAAGTAAAGGTGTTAAAAACCCAATTTCGGGGTCCTGGTTATTCAGATAATGAAGTGCTGTGGATCAGAAAGGGCAGACTCCTGTGAGTTCTGTGATGCAGCCCACTACAAAAATAGGGTATTTTCTTGTTAGATTTAGTGACCCAGATATCCCAGCAGAATTTGGTGTATTTTCTGCTGAAAAAGGCACCTGTGTGGCTGTCTTGTGTTATTTAGTCCATCAGGACTCTGGGAGATGTGCGTGGTGCTCTGGTTTCTCAGCCTTCAGTCGCTGTAGGGTTTCTCGATTATCTTTGCTGCATCGCTGCTTTTCTTCCCAGGGCTGGACAGGGGCTCCACCAGCTTGTTGTGTACCTGCATCATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131679 True 2155 lncRNA 0.38 2 15385716 15404233

Neighbor

gene id symbol gene type direction distance location
AMCG00011244 NA coding downstream 20826 15361316 ~ 15364890 (-)
AMCG00011246 NA coding downstream 38752 15328336 ~ 15346964 (-)
AMCG00011245 NA coding downstream 90211 15282577 ~ 15295505 (-)
AMCG00011237 sept8,LOC103475354 coding downstream 113088 15247192 ~ 15272628 (-)
AMCG00011238 NA coding downstream 146991 15235625 ~ 15238725 (-)
AMCG00011248 NA coding upstream 38957 15443190 ~ 15444125 (-)
AMCG00011261 NA coding upstream 398240 15802473 ~ 15937457 (-)
AMCG00011260 NA coding upstream 570798 15975031 ~ 15977007 (-)
AMCG00011263 cssa04h5orf24 coding upstream 574464 15978697 ~ 15985898 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding upstream 582845 15987078 ~ 16000017 (-)
G105291 NA non-coding downstream 10953 15373347 ~ 15374763 (-)
G105261 NA non-coding downstream 63004 15298645 ~ 15322712 (-)
G105249 NA non-coding downstream 84865 15233703 ~ 15300851 (-)
G105221 NA non-coding downstream 266283 15119207 ~ 15119433 (-)
G105213 NA non-coding downstream 330899 15054416 ~ 15054817 (-)
G105326 NA non-coding upstream 131137 15535370 ~ 15569124 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding upstream 628018 16032251 ~ 16035023 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding upstream 734866 16139099 ~ 16141338 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding upstream 831895 16236128 ~ 16237685 (-)
G105479 NA non-coding upstream 840463 16244696 ~ 16247301 (-)
G105290 LOC108429417 other downstream 12537 15370402 ~ 15373179 (-)
G105050 NA other downstream 1317155 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 1389127 13993983 ~ 13996589 (-)
G104929 NA other downstream 1706454 13665795 ~ 13679262 (-)
G104909 NA other downstream 2018642 13365083 ~ 13367074 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 95301 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 559105 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 639138 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 1539699 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 2313393 17717626 ~ 17751099 (-)

Expression


Co-expression Network