G105290 (LOC108429417)


Basic Information

Item Value
gene id G105290
gene name LOC108429417
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15370402 ~ 15373179 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131692
CTTTGTTTTTGACTGGATTTCTTTCACTTTGACAACAGGTTCCAGTGTAAGGCTCGTCTTGTTCTGTTGGTTCATTTTGCTGTTCATCCAGATCATTGCATCATTGACGGTCTTGTCTACCTTGTCCATCTCTGCAGCGTCCAAGTGCTCGTATTGCTCCTCCTTGGTTTTGTAAGCTTCAACAATTTTCATGTATTGctggatttgttttccaaggTCTTCAAATGCTTTTGGTCTCTCTTCAGCCTCGAGGTATCGATCCTGGATGGGCTGACCAAATTTCTTTAGTTCAGCCAGTTTATCAATGTACACTTGTTTTGGTTGGTCCTCTCCATCTTCATACAACCAGTTTTCGGTATCCTCTAGTTTCAGTGAGAAAGTATCTCTGTCAGCCTCACTAACAAACTTCTCCAGGGCACCATGAAGCTTGTCTCTCATCTCATACACATACTCCTCCACGCAGTTCTTTGCGTCATTTCGTTCCTTCTCGAGTTTATCCTGCATGATCATCTTACCCTCATTTTCAACAAACAGGTTCAGCATATCATTGGCAAGCTGCCACTGCAGGTTGTGTTCAATTGGAAGGTCCACAGTCTTTGTTTTAACTTTAGGCTTTTTGGCCTGAGGGGGTTGATCAGTCTTCTTCTCCTGTTTTGGATCTTCTGGCGAGGTCTCCATTTCATCGGCCTCTTTCTTCTCTGCGTTTTCTTTCGGCTGGTTGTCACTTTGGGCTTTCTGATCTTCGTCAACTTGCATTGTGTTCTCTTCTTCCTTCACGTTTTGCTCCGTATCCATGGGCTCCTCACCCTCTTCAGATTTCTGCACCTCCACTAGAGAGGCACTGGACACACTGAAAATGCCATGGATGTTTACTCTCACTTTCACTTTAACCTTTGAACTCTCGCCAGAAGCCTGGGGAGTGACTTTCTGGACCATAAATTGACCTAGACAGAAGAGAGAAACCacattagtaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: heat shock 70 kDa protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131692 True 993 TUCP 0.43 7 15370402 15373179

Neighbor

gene id symbol gene type direction distance location
AMCG00011244 NA coding downstream 5512 15361316 ~ 15364890 (-)
AMCG00011246 NA coding downstream 23438 15328336 ~ 15346964 (-)
AMCG00011245 NA coding downstream 74897 15282577 ~ 15295505 (-)
AMCG00011237 sept8,LOC103475354 coding downstream 97774 15247192 ~ 15272628 (-)
AMCG00011238 NA coding downstream 131677 15235625 ~ 15238725 (-)
AMCG00011248 NA coding upstream 70011 15443190 ~ 15444125 (-)
AMCG00011261 NA coding upstream 429294 15802473 ~ 15937457 (-)
AMCG00011260 NA coding upstream 601852 15975031 ~ 15977007 (-)
AMCG00011263 cssa04h5orf24 coding upstream 605518 15978697 ~ 15985898 (-)
AMCG00011265 ddx46,LOC107757870,LOC107571605,LOC107713612 coding upstream 613899 15987078 ~ 16000017 (-)
G105261 NA non-coding downstream 47690 15298645 ~ 15322712 (-)
G105249 NA non-coding downstream 69551 15233703 ~ 15300851 (-)
G105221 NA non-coding downstream 250969 15119207 ~ 15119433 (-)
G105213 NA non-coding downstream 315585 15054416 ~ 15054817 (-)
G105187 NA non-coding downstream 441353 14928801 ~ 14929049 (-)
G105291 NA non-coding upstream 168 15373347 ~ 15374763 (-)
G105282 NA non-coding upstream 12537 15385716 ~ 15404233 (-)
G105298 NA non-coding upstream 18553 15391732 ~ 15396392 (-)
G105326 NA non-coding upstream 162191 15535370 ~ 15569124 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding upstream 659072 16032251 ~ 16035023 (-)
G105050 NA other downstream 1301841 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 1373813 13993983 ~ 13996589 (-)
G104929 NA other downstream 1691140 13665795 ~ 13679262 (-)
G104909 NA other downstream 2003328 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 2414135 12942390 ~ 12956267 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 126355 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 590159 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 670192 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 1570753 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 2344447 17717626 ~ 17751099 (-)

Expression


Co-expression Network